#final_report.py
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create_final_report()
- Uses demographical and nextcalde information to build report in csv format
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move_fasta_files()
- Move fasta files from IRMA folder to result folder and rename file with their respective sample ID
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create_alignment_files()
- Creates an alignment file for each Influenza A type tested against based on nextclade output
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create_phylogentic_tree()
- Creates an phylogenetic tree for each Influenza A type tested against
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clean_run_files()
- Deletes intermediate files created during analysis