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springViewer_1_6_dev.html
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springViewer_1_6_dev.html
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<!DOCTYPE html>
<meta charset="utf-8">
<body>
<div id="options_bar">
<div id="button_panel">
<!--
<div id="help">
<button>HELP!</button>
</div>
-->
<div id="layout_tools">
<button id="layout_dropdown_button">Layout</button>
<div id="layout_dropdown" class="dropdown-content">
<a href="javascript:save_coords()">Save coordinates</a>
<a id="center_view">Center view</a>
<a href="javascript:rotation_update()">Rotate / scale</a>
<a id="revert_positions">Undo</a>
<a id="move_left">Move left</a>
<a id="move_right">Move right</a>
<a id="toggle_edges_layout">Hide edges</a>
</div>
</div>
<div class="dropdown">
<button id="download_dropdown_button">Download</button>
<div id="download_dropdown" class="dropdown-content">
<a href="javascript:downloadCoordinates()">Coordinates</a>
<a href="javascript:downloadSelection()">Selected cells</a>
<a href="javascript:show_downloadSelectedExpr_popup()">SPRING data <br> for selection</a>
<a href="javascript:downloadEdges()">Edge list</a>
<a href="javascript:downloadRankedTerms()">Enriched terms</a>
<a href="javascript:downloadDoubletScores()">Doublet scores</a>
<a id="download_png">Screenshot</a>
<!-- <a href="javascript:downloadSVG()">Screenshot (.svg)</a> -->
</div>
</div>
<div class="dropdown">
<button id="tools_dropdown_button">Tools</button>
<div id="tools_dropdown" class="dropdown-content">
<a href="javascript:show_make_new_SPRINGplot_popup()">Make new subplot</a>
<a target="_blank" id="all_SPRINGplots_menu">All subplots menu</a>
<a target="_blank" id="changeViewer_link">Dynamic mode</a>
<a href="javascript:start_clone_viewer()">Linkage broswer</a>
<!-- <a href="javascript:show_stickyNote_popup()">Sticky notes</a> -->
<a href="javascript:show_imputation_popup()">Smooth / Impute</a>
<a href="javascript:show_selection_logic_popup()">Selection logic</a>
<a href="javascript:show_doublet_popup()">Doublet detector</a>
<a href="javascript:run_clustering()">Louvain clustering</a>
<a href="javascript:show_PAGA_popup()">Graph abstraction</a>
<a href="javascript:toggle_legend_hover_tooltip()" id="toggle_legend_hover_tooltip_button">Show label tooltip</a>
</div>
</div>
<div id="settings">
<button>Settings</button>
</div>
<div id="sound_toggle"> </div>
</div>
<div id="color_chooser"> </div>
<div id="fast_buttons_box">
<div id="deselect">
<button>(De)select All</button>
</div>
<div id="slider_select_button">
<button> Slider select</button>
</div>
<div id="quick_dark">
<button>Dark</button>
</div>
<div id="quick_light">
<button>Light</button>
</div>
<div id="extend_selection">
<button onclick="extend_selection()">Extend selection</button>
</div>
</div>
</div>
<div id="container">
<div id="pixi_canvas_holder"> </div>
<div id="force_layout"> </div>
<div id="termsheet" class="sidebar">
<div class="column" id="termcolumn"> </div>
<div class="column" id="scorecolumn" > </div>
</div>
<div id="legend" class="sidebar">
<div class="column" id="count_column"> </div>
<div class="column" id="label_column"> </div>
</div>
</div>
<div id="colorpicker_popup">
<div id="colorpicker_button_bar"> </div>
<div id="colorpickerHolder"> </div>
</div>
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/forceLayout_style.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/selection_style.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/colorbar_style.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/settings_style.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/coexpression_style.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/diffex_style.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/make_new_SPRINGplot_style.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/downloadSelectedExpr_style.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/clone_viewer.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/stickyNote.css">
<link rel="stylesheet" type="text/css" href="scripts_dev_shared/autocomplete_style.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/sweetalert.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/smoothing_imputation.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/doublet_detector.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/cluster2_style.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/selection_logic.css">
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/PAGA_viewer.css">
<!-- <link rel="stylesheet" type="text/css" href="scripts_1_6_dev/stratify.css"> -->
<!-- <link rel="stylesheet" type="text/css" href="scripts_1_6_dev/gridstack.css"> -->
<script src="scripts_1_6_dev/jquery-3.1.0.min.js"></script>
<script src="scripts_1_6_dev/d3.min.js"></script>
<script src="scripts_1_6_dev/d3-queue.v3.min.js"></script> <!-- SPARSE UPDATE -->
<script src="scripts_1_6_dev/colorBar.js"></script>
<script src="scripts_1_6_dev/forceLayout_script.js"></script>
<script src="scripts_1_6_dev/newSpringPlot.js"></script>
<script src="scripts_1_6_dev/rotation_script.js"></script>
<script src="scripts_1_6_dev/selection_script.js"></script>
<script src="scripts_1_6_dev/settings_script.js"></script>
<script src="scripts_1_6_dev/coexpression_script.js"></script>
<script src="scripts_1_6_dev/diffex_script.js"></script>
<script src="scripts_1_6_dev/simg.js"></script>
<script src="scripts_1_6_dev/jspdf.min.js" ></script>
<script src="scripts_1_6_dev/canvg.min.js"></script>
<script src="scripts_1_6_dev/FileSaver.js"></script>
<script src="scripts_1_6_dev/spin.min.js"></script>
<script src="scripts_1_6_dev/pixi.min.js"></script>
<script src="scripts_1_6_dev/make_new_SPRINGplot_script.js"></script>
<script src="scripts_1_6_dev/LineSprite.js"></script>
<script src="scripts_1_6_dev/clone_viewer.js"></script>
<script src="scripts_1_6_dev/stickyNote.js"></script>
<script src="scripts_1_6_dev/downloadSelectedExpr_script.js"></script>
<script src="scripts_dev_shared/jquery.autocomplete.min.js"></script>
<script src="scripts_1_6_dev/sweetalert.min.js"></script>
<script src="scripts_1_6_dev/smoothing_imputation.js"></script>
<script src="scripts_1_6_dev/doublet_detector.js"></script>
<script src="scripts_1_6_dev/cluster2_script.js"></script>
<script src="scripts_1_6_dev/selection_logic.js"></script>
<script src="scripts_1_6_dev/text_annotations.js"></script>
<script src="scripts_1_6_dev/PAGA_viewer.js"></script>
<link rel="stylesheet" type="text/css" href="scripts_1_6_dev/colorpicker.css">
<script src="scripts_1_6_dev/colorpicker.js"></script>
<script src="scripts_1_6_dev/colorpicker_eye.js"></script>
<script src="scripts_1_6_dev/colorpicker_utils.js"></script>
<script src="scripts_1_6_dev/colorpicker_layout.js"></script>
<script>
var rotator_radius = null;
setup_download_dropdown();
setup_tools_dropdown();
d3.select("#sound_toggle").append('img')
.attr('src', "scripts_1_6_dev/sound_effects/icon_mute.svg")
.on("click", function() {
if (d3.select("#sound_toggle").select("img").attr("src") == "scripts_1_6_dev/sound_effects/icon_speaker.svg") {
d3.select("#sound_toggle").select("img").attr("src","scripts_1_6_dev/sound_effects/icon_mute.svg"); }
else { d3.select("#sound_toggle").select("img").attr("src","scripts_1_6_dev/sound_effects/icon_speaker.svg"); } });
function callback() {
center_view(false);
sprites.visible = false;
edge_container.visible = false;
animation();
settings_setup();
selection_setup();
setup_layout_dropdown();
initiateButtons();
make_new_SPRINGplot_setup();
downloadSelectedExpr_setup();
clone_viewer_setup();
stickyNote_setup();
imputation_setup();
doublet_setup();
cluster_setup();
selection_logic_setup();
colorpicker_setup();
PAGA_setup();
//load_text_annotation();
//stratify_setup();
//show_stratify_popup();
//start_clone_viewer();
//show_imputation_popup();
//show_colorpicker_popup('HSC_HSC_fate1');
window.onclick = function(event) {
if (!(event.target.matches('#settings_dropdown *'))) { collapse_settings(); }
if (!event.target.matches('#download_dropdown_button')) { closeDropdown(); }
if (!event.target.matches('#layout_dropdown_button')) { closeDropdown(); }
}
}
var name = window.location.search;
var my_origin = window.location.origin;
var my_pathname = window.location.pathname;
var path_split = my_pathname.split("/")
var path_start = path_split.slice(0, path_split.length-1).join("/")
path_split[path_split.length-1] = "springViewer_1_5_dev.html"
var dynamic_path = path_split.join("/")
d3.select("#changeViewer_link").attr("href", my_origin + dynamic_path + name);
base_dir_name = name.slice(1,name.length).split('/');
base_dir_name = base_dir_name.slice(0,base_dir_name.length-1).join('/');
d3.select("#all_SPRINGplots_menu").attr("href", my_origin + path_start + "/currentDatasetsList.html?"+base_dir_name);
var force_on = 1;
var n_nodes = 0;
var colors_loaded = 0;
graph_directory = name.slice(1,name.length);
var tmp = graph_directory.split('/');
graph_directory = tmp.slice(0,tmp.length-1).join('/');
sub_directory = tmp[tmp.length-1];
document.title = tmp[tmp.length-1];
clone_sprites = {};
clone_edge_container = {};
edge_container = [];
d3.select("#force_layout").select("svg").remove()
d3.select("#color_chooser").selectAll("div").remove()
d3.select("#color_chooser").selectAll("input").remove()
d3.select("#color_chooser").selectAll("select").remove()
forceLayout(graph_directory, sub_directory, callback);
</script>
</body>