From a1e30cd1e065580aa92f6069a6a18af7445d5d28 Mon Sep 17 00:00:00 2001 From: Mirek Kratochvil Date: Mon, 29 Jan 2024 23:34:45 +0100 Subject: [PATCH] flip locations --- README.md | 24 ++++++++++++------------ 1 file changed, 12 insertions(+), 12 deletions(-) diff --git a/README.md b/README.md index 9ba2f841..ff309c9a 100644 --- a/README.md +++ b/README.md @@ -8,25 +8,25 @@ # COnstraint-Based Reconstruction and EXascale Analysis [docs-img-stable]: https://img.shields.io/badge/docs-stable-blue.svg -[docs-url-stable]: https://lcsb-biocore.github.io/COBREXA.jl +[docs-url-stable]: https://cobrexa.github.io/COBREXA.jl [docs-img-dev]: https://img.shields.io/badge/docs-latest-0af.svg -[docs-url-dev]: https://lcsb-biocore.github.io/COBREXA.jl/dev/ +[docs-url-dev]: https://cobrexa.github.io/COBREXA.jl/dev/ -[docs-url-quickstart]: https://lcsb-biocore.github.io/COBREXA.jl/stable/quickstart/ -[docs-url-examples]: https://lcsb-biocore.github.io/COBREXA.jl/stable/examples/ +[docs-url-quickstart]: https://cobrexa.github.io/COBREXA.jl/stable/quickstart/ +[docs-url-examples]: https://cobrexa.github.io/COBREXA.jl/stable/examples/ [docker-url]: https://hub.docker.com/r/lcsbbiocore/cobrexa.jl [docker-img]: https://img.shields.io/docker/image-size/lcsbbiocore/cobrexa.jl -[ci-img]: https://github.com/LCSB-BioCore/COBREXA.jl/actions/workflows/ci.yml/badge.svg?branch=master -[ci-url]: https://github.com/LCSB-BioCore/COBREXA.jl/actions/workflows/ci.yml +[ci-img]: https://github.com/COBREXA/COBREXA.jl/actions/workflows/ci.yml/badge.svg?branch=master +[ci-url]: https://github.com/COBREXA/COBREXA.jl/actions/workflows/ci.yml -[cov-img]: https://codecov.io/gh/LCSB-BioCore/COBREXA.jl/branch/master/graph/badge.svg?token=H3WSWOBD7L -[cov-url]: https://codecov.io/gh/LCSB-BioCore/COBREXA.jl +[cov-img]: https://codecov.io/gh/COBREXA/COBREXA.jl/branch/master/graph/badge.svg?token=H3WSWOBD7L +[cov-url]: https://codecov.io/gh/COBREXA/COBREXA.jl [contrib-img]: https://img.shields.io/badge/contributions-start%20here-green -[contrib-url]: https://lcsb-biocore.github.io/COBREXA.jl/stable/howToContribute/ +[contrib-url]: https://cobrexa.github.io/COBREXA.jl/stable/howToContribute/ [repostatus-url]: https://www.repostatus.org/#active [repostatus-img]: https://www.repostatus.org/badges/latest/active.svg @@ -163,7 +163,7 @@ Download and use them as usual with docker: docker run -ti --rm lcsbbiocore/cobrexa.jl:latest # or alternatively from ghcr.io -docker run -ti --rm ghcr.io/lcsb-biocore/docker/cobrexa.jl:latest +docker run -ti --rm ghcr.io/cobrexa/docker/cobrexa.jl:latest ``` In the container, you should get a `julia` shell with the important packages @@ -173,7 +173,7 @@ already installed, and you may immediately continue the above tutorial from Apptainer (aka Singularity) images are available from GitHub container repository. To start one, run: ```sh -singularity run oras://ghcr.io/lcsb-biocore/apptainer/cobrexa.jl:latest +singularity run oras://ghcr.io/cobrexa/apptainer/cobrexa.jl:latest ``` ...which gives you a running Julia session with COBREXA.jl loaded. @@ -198,5 +198,5 @@ citation format (also available as BibTeX in [cobrexa.bib](cobrexa.bib)): > Miroslav Kratochvíl, Laurent Heirendt, St Elmo Wilken, Taneli Pusa, Sylvain Arreckx, Alberto Noronha, Marvin van Aalst, Venkata P Satagopam, Oliver Ebenhöh, Reinhard Schneider, Christophe Trefois, Wei Gu, *COBREXA.jl: constraint-based reconstruction and exascale analysis*, Bioinformatics, Volume 38, Issue 4, 15 February 2022, Pages 1171–1172, https://doi.org/10.1093/bioinformatics/btab782 -COBREXA logo   Uni.lu logo   LCSB logo   HHU logo   QTB logo   PerMedCoE logo +COBREXA logo   Uni.lu logo   LCSB logo   HHU logo   QTB logo   PerMedCoE logo