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Package SBMLFBCModels.jl defines an instance of the AbstractFBCModel
interface (from package
AbstractFBCModels.jl) atop
of the SBML Model structure (defined by
SBML.jl). This allows you to easily
use the SBML models in constraint-based modeling packages, and convert them to
other constraint-based metabolic modeling data formats.
The primary purpose of this is to provide SBML loading functionality for COBREXA.jl and FBCModelTests.jl, but is otherwise completely generic and can be used independently of these packages.
You should be able to load SBML models via the AbstractFBCModels interface:
import AbstractFBCModels as M
import SBMLFBCModels
model = M.load("my_model.xml")Documentation of AbstractFBCModels.jl provides details on the use of the loaded model.
SBMLFBCModels.jl was developed at the Luxembourg Centre for Systems
Biomedicine of the University of Luxembourg
(uni.lu/lcsb)
and at Institute for Quantitative and Theoretical Biology at Heinrich Heine
University Düsseldorf (qtb.hhu.de).
The development was supported by European Union's Horizon 2020 Programme under
PerMedCoE project (permedcoe.eu),
agreement no. 951773.
