diff --git a/.github/workflows/render-rmarkdown.yaml b/.github/workflows/render-rmarkdown.yaml index a4c2021..e64d1cd 100644 --- a/.github/workflows/render-rmarkdown.yaml +++ b/.github/workflows/render-rmarkdown.yaml @@ -8,15 +8,15 @@ name: Render Rmarkdown files jobs: render: name: Render Rmarkdown files - runs-on: macOS-latest + runs-on: ubuntu-latest env: GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} steps: - uses: actions/checkout@v2 with: fetch-depth: 0 - - uses: r-lib/actions/setup-r@v1 - - uses: r-lib/actions/setup-pandoc@v1 + - uses: r-lib/actions/setup-r@v2 + - uses: r-lib/actions/setup-pandoc@v2 - name: Install needed packages run: | install.packages(c("remotes", "readr", "lubridate", "dplyr", "readr", "tidyr", "ggplot2", "plotly", "kableExtra", "skimr", "Kendall", "DT")) diff --git a/R_scripts/inventory.Rmd b/R_scripts/inventory.Rmd index cd984d5..ce6f13f 100644 --- a/R_scripts/inventory.Rmd +++ b/R_scripts/inventory.Rmd @@ -207,13 +207,14 @@ inv_long %>% .groups = "drop") -> species_mix +# Make a table of fractional BA species_mix %>% filter(Year == max(Year)) %>% group_by(Plot) %>% mutate(BA_frac = BA / sum(BA)) %>% knitr::kable(caption = "Basal area by plot and species") -# Live trees DBH +# Live trees BA ggplot(species_mix, aes(Year, BA, fill = Genus)) + geom_area(position="stack") + facet_grid(Plot~.)