diff --git a/CHANGELOG.md b/CHANGELOG.md index 0e9a3a5..80fc052 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -4,6 +4,10 @@ This project adheres to [Semantic Versioning](http://semver.org/). ## [x.x.x] +## [0.8.1] +Fix DAB1 pathologic repeat unit name +Update POLG coords, quite a bit on hg38 + ## [0.8.0] Off by one error on PathogenticMin output. All affected have at least been cautioned pre_mutation with proper size. Added script to check HGNCId-symbol correspondence against genenames.org. diff --git a/stranger/__version__.py b/stranger/__version__.py index 32a90a3..ef72cc0 100644 --- a/stranger/__version__.py +++ b/stranger/__version__.py @@ -1 +1 @@ -__version__ = '0.8.0' +__version__ = '0.8.1' diff --git a/stranger/resources/variant_catalog_grch37.json b/stranger/resources/variant_catalog_grch37.json index 16b4e50..0ff2989 100755 --- a/stranger/resources/variant_catalog_grch37.json +++ b/stranger/resources/variant_catalog_grch37.json @@ -370,7 +370,7 @@ ], "VariantId": [ "DAB1_ATTTT1", - "DAB1_ATTTC", + "DAB1", "DAB1_ATTTT2" ], "PathologicRegion": "1:57832725-57832780", @@ -1008,10 +1008,10 @@ "LocusStructure": "(CTG)*TTG(CTG)*", "VariantType": ["Repeat","Repeat"], "VariantId": ["POLG_I", "POLG_II"], - "ReferenceRegion": ["15:89876820-89876826", - "15:89876829-89876859"], + "ReferenceRegion": ["15:89876821-89876826", + "15:89876830-89876859"], "NormalMax": 15, "PathologicMin": 10000, - "PathologicRegion": "15:89876829-89876859" + "PathologicRegion": "15:89876830-89876859" } ] diff --git a/stranger/resources/variant_catalog_grch38.json b/stranger/resources/variant_catalog_grch38.json index 536c0c7..3df4ac2 100644 --- a/stranger/resources/variant_catalog_grch38.json +++ b/stranger/resources/variant_catalog_grch38.json @@ -389,7 +389,7 @@ ], "VariantId": [ "DAB1_ATTTT1", - "DAB1_ATTTC", + "DAB1", "DAB1_ATTTT2" ], "PathologicRegion": "1:57367053-57367108", @@ -1217,10 +1217,10 @@ "SourceId": "CMMS", "VariantId": ["POLG_I", "POLG_II"], "LocusStructure": "(CTG)*TTG(CTG)*", - "ReferenceRegion": ["15:89833580-89833586", - "15:89833589-89833628"], + "ReferenceRegion": ["15:89333590-89333595", + "15:89333599-89333628"], "NormalMax": 15, "PathologicMin": 10000, - "PathologicRegion": "15:89833589-89833628" + "PathologicRegion": "15:89333599-89333628" } ] diff --git a/stranger/resources/variant_catalog_hg19.json b/stranger/resources/variant_catalog_hg19.json index 4a20ebe..5b6f77d 100755 --- a/stranger/resources/variant_catalog_hg19.json +++ b/stranger/resources/variant_catalog_hg19.json @@ -370,7 +370,7 @@ ], "VariantId": [ "DAB1_ATTTT1", - "DAB1_ATTTC", + "DAB1", "DAB1_ATTTT2" ], "PathologicRegion": "chr1:57832725-57832780", @@ -1008,10 +1008,10 @@ "LocusStructure": "(CTG)*TTG(CTG)*", "VariantType": ["Repeat","Repeat"], "VariantId": ["POLG_I", "POLG_II"], - "ReferenceRegion": ["chr15:89876820-89876826", - "chr15:89876829-89876859"], + "ReferenceRegion": ["chr15:89876821-89876826", + "chr15:89876830-89876859"], "NormalMax": 15, "PathologicMin": 10000, - "PathologicRegion": "chr15:89876829-89876859" + "PathologicRegion": "chr15:89876830-89876859" } ] diff --git a/stranger/resources/variant_catalog_hg38.json b/stranger/resources/variant_catalog_hg38.json index 4c05404..da43798 100644 --- a/stranger/resources/variant_catalog_hg38.json +++ b/stranger/resources/variant_catalog_hg38.json @@ -389,7 +389,7 @@ ], "VariantId": [ "DAB1_ATTTT1", - "DAB1_ATTTC", + "DAB1", "DAB1_ATTTT2" ], "PathologicRegion": "chr1:57367053-57367108", @@ -1217,10 +1217,10 @@ "SourceId": "CMMS", "VariantId": ["POLG_I", "POLG_II"], "LocusStructure": "(CTG)*TTG(CTG)*", - "ReferenceRegion": ["chr15:89833580-89833586", - "chr15:89833589-89833628"], + "ReferenceRegion": ["chr15:89333590-89333595", + "chr15:89333599-89333628"], "NormalMax": 15, "PathologicMin": 10000, - "PathologicRegion": "chr15:89833589-89833628" + "PathologicRegion": "chr15:89333599-89333628" } ]