From d5f3e765f39cd90854881f59573c4994da4db3ed Mon Sep 17 00:00:00 2001 From: Daniel Nilsson Date: Mon, 1 Jul 2024 18:02:06 +0200 Subject: [PATCH] scout link --- README.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index a956414..9535ad0 100644 --- a/README.md +++ b/README.md @@ -124,7 +124,8 @@ Other fields accepted by ExpansionHunter are also encouraged. | 12874 | ZIC3 | GCN | XR | 10 | 12 | VACTERLX | GeneReviews Internet 2019-11-07 | NBK535148 | | 9179 | POLG | CTG | - | 15 | 10000 | - | Research only. Contact CMMS, KUH, regarding findings. | CMMS | -Stranger can also read a legacy `.tsv` format file, structured like a [Scout](https://github.com/Clinical-Genomics/scout) gene panel, with STR specific columns. + +Stranger can also read a legacy `.tsv` format file, structured like a [Scout][scout] gene panel, with STR specific columns. The column names and keys correspond, but if in any kind of doubt, please read the code or use the json version. As a default the file that follows the distribution is used but the users can create their own file. @@ -215,7 +216,7 @@ and [reference-files]: https://github.com/Clinical-Genomics/reference-files/tree/master/rare-disease/disease_loci/ExpansionHunter-v5.0.0 [strchive]:http://strchive.org [stripy]:https://stripy.org/database - +[scout]:https://github.com/Clinical-Genomics/scout [pypi-img]: https://img.shields.io/pypi/v/stranger.svg?style=flat-square [pypi-url]: https://pypi.python.org/pypi/stranger/ [codecov-img]: https://codecov.io/gh/Clinical-Genomics/stranger/branch/main/graph/badge.svg