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cactus-hal2chains keep the best match #1519

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lyt57 opened this issue Nov 6, 2024 · 2 comments
Open

cactus-hal2chains keep the best match #1519

lyt57 opened this issue Nov 6, 2024 · 2 comments

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@lyt57
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lyt57 commented Nov 6, 2024

Hello, I would like to ask if there is any parameter that can keep only the best match when I use cactus-hal2chains like ：--dupeMode singel in cactus-hal2maf
@glennhickey
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You can try --useHalSynteny -- but I'm not sure if it guarantees only one match.

@lyt57
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lyt57 commented Nov 6, 2024

Thank you! I'll try it!

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@glennhickey @lyt57