Singularity_colmap_vsfm

Bootstrap: docker
From: ubuntu:20.04

%labels
Maintainer: Suxing Liu, Wes Bonelli

#########
#%setup
    mkdir ${SINGULARITY_ROOTFS}/srv/images
    mkdir ${SINGULARITY_ROOTFS}/srv/images/sparse
    mkdir ${SINGULARITY_ROOTFS}/srv/images/sparse/0
    
    mkdir ${SINGULARITY_ROOTFS}/opt/code/
#########

%files
    ./* /opt/code

##Just grabbing default packages from ubuntu repository
%post
    apt-get -ym update
    DEBIAN_FRONTEND=noninteractive apt-get install -y \
    git \
    wget \
    cmake \
    tzdata \
    build-essential \
    libboost-program-options-dev \
    libboost-filesystem-dev \
    libboost-graph-dev \
    libboost-regex-dev \
    libboost-system-dev \
    libboost-test-dev \
    libeigen3-dev \
    libsuitesparse-dev \
    libfreeimage-dev \
    libgoogle-glog-dev \
    libgflags-dev \
    libglew-dev \
    qtbase5-dev \
    libqt5opengl5-dev \
    libcgal-dev
    
    apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y \
    unzip \
    nano \
    glew-utils \
    imagemagick \
    libgtk2.0-dev \
    libglew-dev \
    libdevil-dev \
    libboost-all-dev \
    libatlas-cpp-0.6-dev \
    libatlas-base-dev \
    libatlas3-base \
    liblapack3 \
    libblas3 \
    libblas-dev \
    libcminpack-dev \
    libgfortran5 \
    libmetis-edf-dev \
    libparmetis-dev \
    libjpeg-turbo8 \
    libgsl-dev \
    freeglut3-dev \
    dos2unix 
    
    #apt-get -ym install libcgal-qt5-dev
    
    apt-get -ym install libatlas-base-dev libsuitesparse-dev
    
    
    git clone https://ceres-solver.googlesource.com/ceres-solver
    git clone https://github.com/colmap/colmap.git
    
    # Install ceres-solver
    cd ceres-solver
    git checkout $(git describe --tags) # Checkout the latest release
    mkdir build
    cd build
    cmake .. -DBUILD_TESTING=OFF -DBUILD_EXAMPLES=OFF
    make
    #make -j20
    make install
    
    cd ../..
    
    # Install colmap
    cd colmap
    git checkout master
    mkdir build
    cd build
#    cmake -DCMAKE_EXE_LINKER_FLAGS="-static -ldl -lc" \
#    -DCMAKE_FIND_LIBRARY_SUFFIXES=".a" ..
    cmake ../
    #make -j20
    make 
    make install

    # Install VisualSFM
    cd /opt/code/
    wget http://ccwu.me/vsfm/download/VisualSFM_linux_64bit.zip
    unzip VisualSFM_linux_64bit.zip
    rm VisualSFM_linux_64bit.zip
    cd vsfm
    sed -i 's/LIB_LIST +=/LIB_LIST += -no-pie /' /opt/code/vsfm/makefile
    make


    # Install SiftGPU
    cd /opt/code/
    wget https://github.com/pitzer/SiftGPU/archive/master.zip
    unzip master.zip
    rm  master.zip
    mv SiftGPU-master SiftGPU
    #cp patches/siftgpu.patch /opt/code/SiftGPU/siftgpu.patch
    cd /opt/code/SiftGPU
    #patch -p0 < siftgpu.patch
    make
    cp /opt/code/SiftGPU/bin/libsiftgpu.so /opt/code/vsfm/bin


    # Install PBA
    cd /opt/code/
    wget http://grail.cs.washington.edu/projects/mcba/pba_v1.0.5.zip 
    unzip pba_v1.0.5.zip
    rm pba_v1.0.5.zip
    cd /opt/code/pba
    dos2unix makefile_no_gpu
    make -f makefile_no_gpu
    cp -v /opt/code/pba/bin/libpba_no_gpu.so /opt/code/vsfm/bin/libpba.so


    #Install CMVS-PMVS
    cd /opt/code/
    wget https://github.com/pmoulon/CMVS-PMVS/archive/master.zip 
    unzip master.zip
    rm master.zip
    mv CMVS-PMVS-master CMVS-PMVS
    mkdir -p /opt/code/CMVS-PMVS/program/build
    cd /opt/code/CMVS-PMVS/program/build
    cmake ..
    make install 
    cp /opt/code/CMVS-PMVS/program/build/main/cmvs /opt/code/vsfm/bin/
    cp /opt/code/CMVS-PMVS/program/build/main/pmvs2 /opt/code/vsfm/bin/
    cp /opt/code/CMVS-PMVS/program/build/main/genOption /opt/code/vsfm/bin/


    # Install Graclus
    cd /opt/code/
    wget http://www.cs.utexas.edu/users/dml/Software/graclus1.2.tar.gz 
    tar xzf graclus1.2.tar.gz
    rm graclus1.2.tar.gz 
    #cp patches/graclus.patch /opt/code/graclus1.2/graclus.patch
    sed -i 's/COPTIONS = -DNUMBITS=32/COPTIONS = -DNUMBITS=64/' /opt/code/graclus1.2/Makefile.in
    cd /opt/code/graclus1.2
    #patch -p0 < graclus.patch
    make


    # Install vlfeat
    cd /opt/code/
    wget http://www.vlfeat.org/download/vlfeat-0.9.19-bin.tar.gz 
    tar xzf vlfeat-0.9.19-bin.tar.gz
    rm vlfeat-0.9.19-bin.tar.gz
    cp -v /opt/code/vlfeat-0.9.19/bin/glnxa64/* /opt/code/vsfm/bin/

    # Add configuration file
    cp config/nv.ini /opt/code/vsfm/bin/nv.ini

    
    mkdir /lscratch /db /work /scratch
  
    chmod -R a+rwx /opt/code
  
    mkdir -p /opt/code/vsfm/bin/log && \
    mkdir -p /opt/code/vsfm/bin/temp/log && \
    touch /opt/code/vsfm/bin/temp/temp.pgm && \
    touch /opt/code/vsfm/bin/temp/temp.sift.sift && \
    ln -s /opt/code/vsfm/bin/temp/temp.pgm /opt/code/vsfm/bin/temp.pgm && \
    ln -s /opt/code/vsfm/bin/temp/temp.sift.sift /opt/code/vsfm/bin/temp.sift.sift && \
    ln -s /opt/code/vsfm/bin/temp/log /opt/code/vsfm/bin/log

    strip --remove-section=.note.ABI-tag /usr/lib/x86_64-linux-gnu/libQt5Core.so


%environment
    PATH=$PATH:/opt/code/vsfm/bin/
    export PATH
    LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/opt/code/vsfm/bin/
    export LD_LIBRARY_PATH
    
%runscript
    /opt/code/vsfm/bin/VisualSFM "$@"