From b75b0aaef674c9bcee126983a17ef1e73a81bf8a Mon Sep 17 00:00:00 2001 From: Mik Black Date: Wed, 22 May 2024 10:45:22 +1200 Subject: [PATCH] Added YAML --- ga-tools.md | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/ga-tools.md b/ga-tools.md index 39913c6..30ce18e 100644 --- a/ga-tools.md +++ b/ga-tools.md @@ -1,3 +1,7 @@ +layout: page +title: "GA tools" +permalink: / + # Tools, workflows and pipelines The following are links to Genomics Aotearoa GitHub repositories that inmplement specific @@ -11,4 +15,4 @@ analysis workflows. - [BMSB-popgenomics](https://github.com/GenomicsAotearoa/BMSB-popgenomics) - Population genomic analysis of the brown marmorated stink bug, Halyomorpha halys for the GA Invasomics project - [GraphPanGenomes_Microbial](https://github.com/GenomicsAotearoa/GraphPanGenomes_Microbial) - Microbial genomics pipeline to build and analyse genome graphs - [vcf_annotation_pipeline](https://github.com/GenomicsAotearoa/vcf_annotation_pipeline) - A Snakemake workflow to filter, annotate and prepare variant call format (VCF) data for scout using GATK4, SnpSift, VEP and genmod. Designed to be used after human_genomics_pipeline. -- [human_genomics_pipeline](https://github.com/GenomicsAotearoa/human_genomics_pipeline) - A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks. \ No newline at end of file +- [human_genomics_pipeline](https://github.com/GenomicsAotearoa/human_genomics_pipeline) - A Snakemake workflow to process single samples or cohorts of paired-end sequencing data (WGS or WES) using trim galore/bwa/GATK4/parabricks.