-
Notifications
You must be signed in to change notification settings - Fork 15
41 lines (35 loc) · 1.16 KB
/
build.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
name: Build Xmipp
on:
pull_request:
jobs:
build:
runs-on: ubuntu-22.04
env:
SEND_INSTALLATION_STATISTICS: "False"
steps:
- name: Install dependencies
run: |
sudo apt-get update
sudo apt-get install -y libfftw3-dev libopenmpi-dev libhdf5-dev libtiff5-dev libsqlite3-dev default-jdk git cmake openmpi-bin
- uses: actions/setup-python@main
with:
python-version: '3.9.15'
- run: |
python -m pip install --upgrade pip
python -m pip install numpy
- uses: Jimver/cuda-toolkit@master
id: cuda-toolkit
with:
cuda: '11.8.0'
method: network
sub-packages: '["nvcc", "toolkit"]'
- uses: actions/checkout@main
with:
fetch-depth: 0
ref: ${{ github.head_ref }}
- name: Compile Xmipp will all dependencies in branch ${{ github.head_ref }} (if such branch exists, default is devel)
env:
BRANCH_NAME: ${{ github.head_ref }}
run: |
echo "XMIPP_LINK_TO_SCIPION=OFF" > xmipp.conf
./xmipp all -b $BRANCH_NAME --keep-output || (cat compilation.log && false)