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Annotator-Template.html
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Annotator-Template.html
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<!DOCTYPE html>
<html>
<head>
<base target="_top">
<script src="https://code.jquery.com/jquery-1.9.1.js"></script>
<style>
@import url(//weloveiconfonts.com/api/?family=entypo);
/* entypo */
[class*="entypo-"]:before {
font-family: 'entypo', sans-serif;
}
body,
html {
font-family: 'Roboto', sans-serif;
font-size: 14px;
color: #666666;
padding: 10px;
}
p {
margin: 0;
}
.branding-above {
padding: 0;
top: 0;
}
.sidebar {
width: 94%;
}
.hidden {
display: none;
}
.error {
padding-top: 10px;
color: #e74c3c;
}
.branding-below {
bottom: 56px;
position: fixed;
background-color: #fff;
top: 0;
}
.branding-text {
left: 7px;
position: relative;
font-size: .9em;
top: 3px;
}
.ontomaton-header {
padding-top: 5px;
height: 75px;
}
.col-contain {
overflow: hidden;
}
h3 {
margin-left: 0px;
text-align: left;
font-size: 1em;
cursor: pointer;
}
.col-one {
float: left;
width: 50%;
}
.logo {
vertical-align: middle;
}
.pull-left {
float: left;
}
.pull-right {
float: right;
}
.width-100 {
width: 100%;
}
#service {
width: 100%;
margin-bottom: 8px;
padding: 4px 6px;
}
.search-results ul {
list-style: none;
margin: 0px;
text-align: left;
}
.term-info {
float: left;
width: 70%;
margin: 3%;
}
.term-buttons {
float: right;
width: 21%;
}
.search-results ul li {
padding: 4px;
font-weight: bolder;
border-bottom: 1px solid #f6f7f6;
}
.search-results ul li a {
color: #5A9C43;
text-decoration: none;
}
.ontology-abbr {
text-align: left;
font-weight: bolder;
font-size: 1em;
color: #414241;
}
.ontology-name {
text-align: left;
font-weight: bolder;
font-size: .8em;
color: #95A5A5;
}
.term-count {
text-align: right;
padding: 7px 5px;
background-color: #4FBA6F;
color: #fff;
border-radius: 50%;
font-size: .8em;
}
.btn-green {
text-align: center;
padding: 5px 8px;
border-radius: 4px;
border: none;
background-color: #5A9C43;
width: 100%;
color: white;
display: block;
cursor: pointer;
}
.bth-green:hover {
background-color: #4FBA6F;
}
ul {
-webkit-padding-start: 5px;
}
.term-button button {
background-color: #ecf0f1;
color: #414241;
padding: 5px 8px;
border: none;
cursor: pointer;
display: block;
}
.clearfix:after {
content: " ";
/* Older browser do not support empty content */
visibility: hidden;
display: block;
height: 0;
clear: both;
}
#spinner {
margin-top: 60px;
text-align: center;
}
#spinner p {
font-weight: bolder;
color: color: #414241;
}
#search-text {
background-color: #f6f7f6;
border: none;
padding: 5px 6px;
border-radius: 4px;
}
.footer {
text-align: center;
position: absolute;
width: 242px;
bottom: 12px;
}
.info {
padding: 10px;
background-color: #ecf0f1;
font-weight: bolder;
margin-bottom: 10px;
}
.ontology-result {
margin-bottom: 5px;
cursor: pointer;
}
.annotator-results {
padding-left: 15px;
}
</style>
</head>
<body>
<div class="ontomaton-header">
<img src="//isa-tools.org/OntoMaton/figures/ontomaton-tagging.png" />
</div>
<div class="block" id="button-bar" style="margin-top:20px">
<div class="info">
<p>Please note that this service only uses the BioPortal API.</p>
</div>
<button class="btn-green" id="run-annotator">Tag Terms</button>
</div>
<div id="search-results" class="block form-group search-results"
style="height:60vh; overflow: scroll; padding-top: 10px">
</div>
<div class="footer">
<img alt="Add-on logo" class="logo" src="//isa-tools.org/wp-content/themes/isatools-wp-theme/img/footer_logo.svg"><br />
<span class="gray branding-text">Created by the <a href="http://isa-tools.org" target="_blank">ISA tools</a>
team</span>
</div>
<script>
$(function () {
$('#run-annotator').click(runAnnotator);
});
/**
* Taken from http://www.mustbebuilt.co.uk/2012/04/20/replaceall-function-for-javascript-and-actionscript/
*/
function replaceAll(oldStr, removeStr, replaceStr, caseSenitivity) {
var cs = "gi"
if (caseSenitivity == 1) {
cs = "g";
}
var myPattern = new RegExp(removeStr, cs);
return oldStr.replace(myPattern, replaceStr);
}
/**
* Inserts the term in to the spreadsheet.
*/
function insertTerm(term_id) {
google.script.run
.withSuccessHandler(
function (result, element) {
}).withFailureHandler(
function (msg, element) {
showError(msg, $('#button-bar'));
element.disabled = false;
})
.withUserObject(this)
.replaceTermWithSelectedValue(term_id)
}
function toggle(id) {
$("#" + id).toggleClass("hidden");
var isHidden = $("#" + id).hasClass("hidden");
$("#expand-icon-" + id).removeClass(isHidden ? "entypo-minus" : "entypo-plus");
$("#expand-icon-" + id).addClass(isHidden ? "entypo-plus" : "entypo-minus");
}
/**
* Runs a server-side function to translate the user-selected text and update
* the sidebar UI with the resulting translation.
*/
function runAnnotator() {
this.disabled = true;
$('#search-results').html('<div id="spinner"><img src="//s-media-cache-ak0.pinimg.com/originals/0a/59/71/0a59718a5ee79a0558930ca9907c0659.gif" width="70px"/><p>Searching...</p></div>');
$('#error').remove();
google.script.run
.withSuccessHandler(
function (result, element) {
var html = '<div id="result-accordion" class="accordion">';
var count = 0
Object.keys(result).forEach(function(term_key) {
html += '<h3 onclick="toggle(\'results-' + count + '\')"><span id="expand-icon-results-' + count + '" class="entypo-plus expand-icon" style="font-size: 1.2em"> </span><span class="freetext-term">' + term_key + '</span> - <span class="ontology-name">Results from ' + Object.keys(result[term_key]["results"]).length + ' ontologies.</span></h3>' +
'<div class="annotator-results hidden" id="results-' + count + '">';
Object.keys(result[term_key]["results"]).sort().forEach(function(ontology_source_key) {
var ontology_name = result[term_key]["results"][ontology_source_key]["ontology-name"];
html += '<div class="clearfix"></div>';
html += '<div class="ontology-result"><p style="text-align:left" onclick="toggle(\'ont-' + count + ontology_source_key + '\')"><span id="expand-icon-ont-' + count + ontology_source_key + '" class="entypo-plus expand-icon"></span><span class="ontology-abbr"> ' + ontology_source_key + '</span> - <span class="ontology-name">' + ontology_name + '</span></p>';
html += '<div id="ont-' + count + ontology_source_key + '" class="hidden ont-results">';
html += "<ul>";
result[term_key]["results"][ontology_source_key].terms.forEach(function(term) {
var label = term["label"];
html += '<li>' +
'<div class="term-info">' +
'<a href="' + term["id"] + '" target="_blank">' + term["label"] + '</a>' +
'</div>' +
'<div class="term-button"><button onclick="insertTerm(\'' + term["id"] + '\')" style="margin-left:-5px">Insert</button></div>' +
'<div class="clearfix"></div>' +
'</li>';
});
html += "</div></ul></div>";
});
html += '</div>';
count += 1;
});
html += "</div>";
$('#search-results').html(html);
element.disabled = false;
$('#spinner').addClass("hidden");
})
.withFailureHandler(
function (msg, element) {
$('#spinner').addClass("hidden");
console.log(msg);
showError(msg, $('#button-bar'));
element.disabled = false;
})
.withUserObject(this)
.runAnnotator();
}
/**
* Inserts a div that contains an error message after a given element.
*
* @param msg The error message to display.
* @param element The element after which to display the error.
*/
function showError(msg, element) {
var div = $('<div id="error" class="error">' + msg + '</div>');
$(element).after(div);
}
</script>
</body>
</html>