Installation fails

[jakobhaervig]

I'm following instructions found here https://imperialcollegelondon.github.io/PyProBE/user_guide/installation.html
All seems to install just fine but when I try to load the module with

import pyprobe

I get:
[WARNING] citations.read_citations(76): Citations could not be read because the 'pybtex' library is not installed. Install 'pybamm[cite]' to enable citation reading.

Also, my I suggest that all dependencies are kept in pyproject.toml only. The requirements.txt seems redundant to me?

[tomjholland]

Thanks @jakobhaervig, that user warning is from PyBaMM (a dependency). It causes no runtime issues but I will try to supress it.

[tomjholland]

Regarding requirements.txt, this is auto-generated from the pyproject.toml using pip-tools which ensures that the dependencies are compatible. This way they are not independent of each other. Having it in the repo removes the pip-compile step in the installation.

[jakobhaervig]

Step 3 and the requirements.txt is redundant. You may have to specify versions in pyproject.toml directly. You can basically leave it out (step 3) and simply do pip install ., which will read dependencies from pyproject.toml. Only having dependencies listed one place is cleaner in my opinion.