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mainwindow.cpp
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mainwindow.cpp
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#include "mainwindow.h"
#include "ui_mainwindow.h"
#include <QtSerialPort/QSerialPort>
#include <QtSerialPort/QSerialPortInfo>
#include <iostream>
#include <fstream>
#include <stdio.h>
#include "QTime"
#include "settingdialog.h"
#include "qmessagebox"
#include "qcloseevent"
#include <QElapsedTimer>
static const char blankString[] = QT_TRANSLATE_NOOP("SettingsDialog", "N/A");
MainWindow::MainWindow(QWidget *parent) : QMainWindow(parent),
ui(new Ui::MainWindow)
{
ui->setupUi(this);
settings= new SettingDialog ;
connect(ui->actionSet_connection, &QAction::triggered, settings, &MainWindow::show);
X_current=0,Y_current=0, Current= QByteArray::number(0);
//--------------------WIDGETS Setting---------------------------
ui->Current_X->setEnabled(false);
ui->Current_Y->setEnabled(false);
ui->Current_X->setText(QString::number(X_current));
ui->Current_Y->setText(QString::number(Y_current));
ui->checkBox_ErrorX->setEnabled(false);
ui->checkBox_ErrorY->setEnabled(false);
ui->checkBox_ZeroX->setEnabled(false);
ui->checkBox_ZeroY->setEnabled(false);
ui->checkBox_ReadyX->setEnabled(false);
ui->checkBox_ReadyY->setEnabled(false);
//parameters for calculation dose
limit_range_random=10; //AID 06_05
CalibrationConstant=0;
pEnergyAtSample=0;
LET=0;
flux=0,
ScaleCoeficient=1,
fluence=0,
total_fluence=0,
DoseInSilicone=0;
AbsorbedDose=0;
CalcBeamParams(); //calculate parameters of the beam according to the known used absorber plates
ui->BeamMonitoring_button->setText("START Beam Monitoring");
ui->BeamMonitoring_button->setCheckable(true);
ui->BeamRefresh_button->setCheckable(true);
ui->BeamIntegrating_button->setCheckable(true);
ui->BeamReachDose_button->setCheckable(true);
ui->pushButton_Debug->setCheckable(true);
ui->ScaleSpinBox->setValue(1);
ui->ScaleSpinBox->setMaximum(1000);
ui->spinBox_Period->setValue(2);
ui->spinBox_Avr_range->setValue(2);
ui->spinBox_Step->setValue(10);
connect(ui->BeamMonitoring_button, SIGNAL(toggled(bool)),this,SLOT(Start_timer(bool)));
connect(ui->BeamRefresh_button, SIGNAL(toggled(bool)),this,SLOT(Start_refresh(bool)));
connect(ui->BeamReachDose_button, SIGNAL(toggled(bool)),this,SLOT(Start_ReachDose(bool)));
connect(ui->BeamIntegrating_button, SIGNAL(toggled(bool)),this,SLOT(Start_integration(bool)));
connect(ui->pushButton_Debug, SIGNAL(toggled(bool)),this,SLOT(ShowDebug(bool)));
connect(ui->AxisX_Button,SIGNAL(toggled(bool)),this,SLOT(SetupScanRange()));
//connect(ui->toolButton, SIGNAL(),this,SLOT(Start_timer(bool)));
ui->AxisX_Button->setChecked(true);
ui->spinBox_ScanMax->setValue(100);
timestamp_begin=QDateTime::currentDateTime().toTime_t();
DirName=QString::number(QDateTime::currentDateTime().toTime_t());
QDir().mkdir(DirName);
ui->spinBox_Step->setMinimum(1);
ui->spinBox_Period->setMinimum(1);
ui->spinBox_Avr_range->setMinimum(2);
ui->spinBox_AxisRange->setValue(5);
ui->spinBox_TargetDose->setValue(100);
ui->spinBox_TargetDose->setMaximum(500);
ui->spinBox_HereX->setMinimum(0);
ui->spinBox_HereX->setMaximum(AXIS_RANGEX);
ui->spinBox_HereY->setMinimum(0);
ui->spinBox_HereY->setMaximum(AXIS_RANGEY);
ui->spinBox_AxisRange->setMaximum(999);
ui->spinBox_MoveX->setMinimum(0);
ui->spinBox_MoveX->setMaximum(AXIS_RANGEX);
ui->spinBox_MoveY->setMinimum(0);
ui->spinBox_MoveY->setMaximum(AXIS_RANGEY);
ui->spinBox_MoveX_2->setMinimum(0);
ui->spinBox_MoveX_2->setMaximum(AXIS_RANGEX);
ui->spinBox_MoveY_2->setMinimum(0);
ui->spinBox_MoveY_2->setMaximum(AXIS_RANGEY);
ui->Move_button2->setDisabled(true);
ui->Here_button->setDisabled(true);
//All state labels is OFF (Red)
ui->label_MCL_state->setStyleSheet("QLabel { background-color : red; }");
ui->label_MCL_state->setAlignment(Qt::AlignCenter);
ui->label_UNIDOS_state->setStyleSheet("QLabel { background-color : red;}");
ui->label_UNIDOS_state->setAlignment(Qt::AlignCenter);
ui->label_calibration_state->setStyleSheet("QLabel { background-color : Red; font-size: 11pt;font-weight: bold;}");
ui->label_calibration_state->setText("NEED CALIBRATION");
ui->label_monitoring_state->setStyleSheet("QLabel { background-color : red; }");
ui->label_monitoring_state->setAlignment(Qt::AlignCenter);
//Setting of labels for radiation status
ui->label_Avr_current->setAlignment(Qt::AlignCenter);
ui->label_Avr_current->setText("Average chamber current [pA] per " +QString::number(ui->spinBox_Period->value()*ui->spinBox_Avr_range->value()) + "s " + QString::number(0));
ui->label_Avr_flux->setAlignment(Qt::AlignCenter);
ui->label_Avr_flux->setText("Average proton flux [cm^-2*s^-1] per " +QString::number(ui->spinBox_Period->value()*ui->spinBox_Avr_range->value()) + "s " + QString::number(0));
ui->label_Int_dose->setAlignment(Qt::AlignCenter);
ui->label_Int_dose->setText("Integrated dose in silicon [krad] " + QString::number(0));
ui->label_Fluence->setAlignment(Qt::AlignCenter);
ui->label_Fluence->setText("Fluence [cm^-2] "+ QString::number(0));
ui->label_Sil_dose->setAlignment(Qt::AlignCenter);
ui->label_Sil_dose->setText("Dose in silicon [krad] "+ QString::number(0) );
ui->Info_label_1->setAlignment(Qt::AlignCenter);
ui->Info_label_1->setText("k [pA^-1 cm^-2 s^-1]= " + QString::number(CalibrationConstant) + "\n E of p hitting sample [MeV]= " + QString::number(pEnergyAtSample) + " \n LET in Si [MeV/ (mg/cm2)]= ");
ui->doubleSpinBox_LET->setValue(LET);
ui->Info_label_2->setAlignment(Qt::AlignCenter);
ui->Info_label_2->setText("Gaus Amplitude [nA] " + QString::number(expected_amp) + "\n \n Gaus Mean [mm] " + QString::number(expected_mean)+ "\n \n Gaus Sigma [mm] " + QString::number(expected_sigma) + "\n \n Scale (approx.) " + QString::number(GausScale));
//------------TIMER--------------------------------------
timer = new QTimer(this);
connect(timer, SIGNAL(timeout()), this, SLOT(WriteLogFile())); //Calculate all radiation parameters and write it to log file
connect(ui->spinBox_Period,SIGNAL(valueChanged(int)),this,SLOT(ChangeTimerPeriod(int)));
//--------------------Draw MCL AREA
Draw_MCL_area(X_current,Y_current);
//--------------------Draw Monitoring AREA
ui->Monitoring_area->addGraph();
ui->Monitoring_area->axisRect()->setupFullAxesBox();
Draw_Monitoring_area();
//Draw Scan Area
ui->Scan_area->addGraph();
ui->Scan_area->addGraph();
ui->Scan_area->axisRect()->setupFullAxesBox();
Draw_Scan_area();
//-----COM_MCL------------------------------------------------
//COM19
COM_MCL=new Port(0,MCL_port_name,115200,QSerialPort::Data8,QSerialPort::NoParity,QSerialPort::OneStop);
QThread *thread_New = new QThread;
connect(this, SIGNAL(RunMCL(bool,QString)),COM_MCL, SLOT(OpenClose_SerialPort(bool,QString))); //read settings of com port and open/close it
connect(thread_New, SIGNAL(started()), COM_MCL, SLOT(process_Port()));// probably unnecessary
connect(COM_MCL, SIGNAL(finished_Port()), thread_New, SLOT(quit()));// ??? some QTmagic
connect(COM_MCL, SIGNAL(finished_Port()), thread_New, SLOT(deleteLater()));// destructor of the thread
connect(this,SIGNAL(NanotechStartSettings()),COM_MCL,SLOT(SetNanotech()));
//connect(ui->Calibrate_button, SIGNAL(clicked(bool)),COM_MCL, SLOT(Calibrate())); //start procedure of calibration
connect(ui->Here_button,SIGNAL(clicked(bool)),this,SLOT(ReadNEWCoordinate_Here()));
connect(ui->Move_button,SIGNAL(clicked(bool)),this,SLOT(ReadNEWCoordinate_Move()));
connect(ui->Move_button2,SIGNAL(clicked(bool)),this,SLOT(ReadNEWCoordinate_Move2()));
connect(ui->pushButton_CheckPosition,SIGNAL(clicked(bool)),COM_MCL,SLOT(UpdateCoordinates()));
connect(ui->pushButton_ClrError,SIGNAL(clicked(bool)), COM_MCL,SLOT(ClearPositionError()));
connect(ui->doubleSpinBox_LET,SIGNAL(valueChanged(double)),this,SLOT(UpdateLET(double)));
connect (ui->pushButton_CheckState,SIGNAL(clicked(bool)),COM_MCL,SLOT(Check_Nanotec_state()));
connect (COM_MCL,SIGNAL(Nanotec_state(bool,bool,bool,bool,bool,bool)),this,SLOT(Show_Nanotec_state(bool,bool,bool,bool,bool,bool)));
connect(ui->pushButton_STOP,SIGNAL(clicked(bool)),COM_MCL,SLOT(StopButton()),Qt::DirectConnection);
connect(COM_MCL,SIGNAL(CalibrationDone(bool)),this,SLOT(CalibrationProceed(bool)));
// connect(COM_MCL,SIGNAL(STOP_MCL()),COM_MCL,SLOT(STOP_MOVING()),Qt::DirectConnection);
// connect(COM_MCL,SIGNAL(StartComandTransferForMCL(QByteArray, QString)),COM_MCL,SLOT(ComandTransferForMCL(QByteArray,QString)),Qt::DirectConnection);
// connect(this,SIGNAL(StopMovement()),COM_MCL,SLOT(STOP_MOVING()),Qt::DirectConnection);
connect(COM_MCL,SIGNAL(ConnectionError()),this,SLOT(PortConnectionError()));
connect(COM_MCL,SIGNAL(LimitSwitchError()),this,SLOT(LimitSwitchError()));
connect(ui->pushButton_Calibration,SIGNAL(clicked()),this,SLOT(SetupCalibration()));
connect(this,SIGNAL(StartCalibration()),COM_MCL,SLOT(Calibration()));
connect(COM_MCL,SIGNAL(MotorStat(bool)),this,SLOT(MotorMovingError(bool)));
connect(ui->FtGaus_button,SIGNAL(clicked(bool)),this,SLOT(FitGaus()));
connect(ui->Res_Gaus_button,SIGNAL(clicked(bool)),this,SLOT(ResetGaus()));
connect(this,SIGNAL(MoveTo(int,int)),COM_MCL,SLOT(MOVE_MCL(int,int)));
connect(COM_MCL, SIGNAL(Current_coordinate_changed(int,int)),this, SLOT(WriteCurrentCoordinate(int,int)));
// connect(this,SIGNAL(RunMCL()),COM_MCL,SLOT(ReadMCL())); // why do I have TWO runMCL? !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!1
COM_MCL->moveToThread(thread_New);
COM_MCL->thisPort->moveToThread(thread_New);
thread_New->start();
//------------------DEGRADER-------------------------------------------------
//COM20
COM_DEGRADER=new Port(0,Degrader_port_name,115200 ,QSerialPort::Data8,QSerialPort::NoParity,QSerialPort::OneStop);
// COM_DEGRADER=new Port(0,"COM2");
QThread *thread_New2 = new QThread;
COM_DEGRADER->moveToThread(thread_New2);
COM_DEGRADER->thisPort->moveToThread(thread_New2);
connect(thread_New2, SIGNAL(started()), COM_DEGRADER, SLOT(process_Port()));//Unnecessary probably
connect(COM_DEGRADER, SIGNAL(finished_Port()), thread_New2, SLOT(quit()));//???
connect(COM_DEGRADER, SIGNAL(finished_Port()), thread_New2, SLOT(deleteLater()));//destructor
connect(COM_DEGRADER,SIGNAL(Set_check_box_abs1(bool)),ui->checkBox_Degrader_abs1,SLOT(setChecked(bool)));
connect(COM_DEGRADER,SIGNAL(Set_check_box_abs2(bool)),ui->checkBox_Degrader_abs2,SLOT(setChecked(bool)));
connect(COM_DEGRADER,SIGNAL(Set_check_box_1(bool)),ui->checkBox_Degrader_1,SLOT(setChecked(bool)));
connect(COM_DEGRADER,SIGNAL(Set_check_box_2(bool)),ui->checkBox_Degrader_2,SLOT(setChecked(bool)));
connect(COM_DEGRADER,SIGNAL(Set_check_box_05(bool)),ui->checkBox_Degrader_05,SLOT(setChecked(bool)));\
connect(ui->checkBox_Degrader_1,SIGNAL(stateChanged(int)),this,SLOT(CalcBeamParams()));
connect(ui->checkBox_Degrader_05,SIGNAL(stateChanged(int)),this,SLOT(CalcBeamParams()));
connect(ui->checkBox_Degrader_2,SIGNAL(stateChanged(int)),this,SLOT(CalcBeamParams()));
connect(ui->CheckState_button,SIGNAL(clicked(bool)),COM_DEGRADER,SLOT(Check_Degrader_State()));
connect(this, SIGNAL(RunDegrader(bool,QString)),COM_DEGRADER, SLOT(OpenClose_SerialPort(bool,QString)));
thread_New2->start();
connect(ui->checkBox_Degrader_05, SIGNAL(clicked(bool)),COM_DEGRADER,SLOT(MoveDegrader_05(bool)));
connect(ui->checkBox_Degrader_1, SIGNAL(clicked(bool)),COM_DEGRADER,SLOT(MoveDegrader_1(bool)));
connect(ui->checkBox_Degrader_2, SIGNAL(clicked(bool)),COM_DEGRADER,SLOT(MoveDegrader_2(bool)));
connect(ui->checkBox_Degrader_abs1, SIGNAL(clicked(bool)),COM_DEGRADER,SLOT(MoveDegrader_abs1(bool)));
connect(ui->checkBox_Degrader_abs2, SIGNAL(clicked(bool)),COM_DEGRADER,SLOT(MoveDegrader_abs2(bool)));
//----------------------UNIDOS------------------------------
// COM_UNIDOS=new Port(0,"COM5");
//COM18
COM_UNIDOS=new Port(0,UNIDOS_port_name,9600 ,QSerialPort::Data8,QSerialPort::NoParity,QSerialPort::OneStop);
if (COM_UNIDOS== NULL) qDebug("Error with opening UNIDOS");
QThread *thread_New3 = new QThread;
COM_UNIDOS->moveToThread(thread_New3);
COM_UNIDOS->thisPort->moveToThread(thread_New3);
connect(this, SIGNAL(RunUNIDOS(bool,QString)),COM_UNIDOS, SLOT(OpenClose_SerialPort(bool,QString)));
connect(thread_New3, SIGNAL(started()), COM_UNIDOS, SLOT(process_Port()));//we don`t need it
connect(COM_UNIDOS, SIGNAL(finished_Port()), thread_New3, SLOT(quit()));//???
connect(COM_UNIDOS, SIGNAL(finished_Port()), thread_New3, SLOT(deleteLater()));//destructor
thread_New3->start();
connect(this,SIGNAL(RunUNIDOS()),COM_UNIDOS,SLOT(ReadUNIDOS())); // why do I have TWO RunUNIDOS? !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!1
connect(COM_UNIDOS, SIGNAL(Current_changed(QByteArray&,int)),this, SLOT(WriteCurrent(QByteArray&,int)),Qt::DirectConnection);
//-------------------SCAN----------------------------------
It= new Something();
QThread *thread_New4 = new QThread;
It->moveToThread(thread_New4);
connect(It, SIGNAL(killed()), thread_New4, SLOT(quit()));//???
connect(It, SIGNAL(killed()), thread_New4, SLOT(deleteLater()));//destructor
connect(It,SIGNAL(BeamScanDone()),this,SLOT(BeamScanState()));
connect(ui->StartScan_button,SIGNAL(clicked(bool)),this,SLOT(BeamScanSetup()));
connect(this,SIGNAL(BeamScanRun(bool,int,int,int,int)),It,SLOT(BeamScan(bool,int,int,int,int)));
connect(It,SIGNAL(MoveItTo(int,int)),COM_MCL,SLOT(MOVE_MCL(int,int)));
connect(It,SIGNAL(RunItUNIDOS()),COM_UNIDOS,SLOT(ReadUNIDOS()));
connect(this, SIGNAL(Main_CoordinateUpdated()),It, SLOT(CoordinateUpdated()),Qt::DirectConnection);
connect(this, SIGNAL(Current_CoordinateUpdated(int)),It, SLOT(CurrentUpdated(int)),Qt::DirectConnection);
connect(It, SIGNAL(Draw_Scan()),this, SLOT(Draw_Scan_area()));
connect(ui->SaveFit_Button,SIGNAL(clicked(bool)),this,SLOT(SaveFit()));
connect(ui->AbortScan_button,SIGNAL(clicked(bool)),It,SLOT(AbortScan()),Qt::DirectConnection);
thread_New4->start();
//-------------------Change Label states
connect(COM_MCL,SIGNAL(Port_state_changed(QSerialPort*,bool)),this,SLOT(Label_device_state(QSerialPort*,bool)));
connect(COM_UNIDOS,SIGNAL(Port_state_changed(QSerialPort*,bool)),this,SLOT(Label_device_state(QSerialPort*,bool)));
connect(settings,SIGNAL(Communication_settings_changed(int,QString,QString,QString)),this,SLOT(OPENCLOSE_ports(int,QString,QString,QString)));
connect(COM_MCL,SIGNAL(NewDebugMSG(QString)),this,SLOT(WriteDebugMSG(QString)));
connect(COM_UNIDOS,SIGNAL(NewDebugMSG(QString)),this,SLOT(WriteDebugMSG(QString)));
connect(COM_DEGRADER,SIGNAL(NewDebugMSG(QString)),this,SLOT(WriteDebugMSG(QString)));
connect(It,SIGNAL(NewDebugMSG(QString)),this,SLOT(WriteDebugMSG(QString)));
connect(COM_MCL,SIGNAL(ErrorInOpenPort(QString)),settings,SLOT(ErrorInOpening(QString)));
connect(COM_UNIDOS,SIGNAL(ErrorInOpenPort(QString)),settings,SLOT(ErrorInOpening(QString)));
connect(COM_DEGRADER,SIGNAL(ErrorInOpenPort(QString)),settings,SLOT(ErrorInOpening(QString)));
// initActionsConnections();
}
void MainWindow::UpdateLET(double input){
LET=input;
qDebug()<<"New LET value from spinbox:" << LET;
}
void MainWindow::ChangeTimerPeriod(int time){
timer->stop();
timer->start(ui->spinBox_Period->value()*1000);
}
void MainWindow::ShowDebug(bool state)
{
if (state)
{
ui->pushButton_Debug->setText("Close Debug");
ui->textBrowser->setGeometry(402,450,384,191);
}
else
{
ui->pushButton_Debug->setText("Expand Debug");
ui->textBrowser->setGeometry(402,600,384,41);
}
}
void MainWindow:: WriteDebugMSG(QString msg)
{
DebugStr+=msg;
ui->textBrowser->setText(DebugStr);
QScrollBar *sb= ui->textBrowser->verticalScrollBar();
sb->setValue(sb->maximum());
if (DebugStr.size() > 2000) DebugStr= ' ';
}
void MainWindow:: ResetGaus(){
const QCPDataMap *dataMap= ui->Scan_area->graph(0)->data();
if (dataMap->empty()){
WriteDebugMSG("No data scan found, nothing to reset \n");
return;
}
limit_range_random = 10;
ui->Scan_area->graph(1)->clearData();
expected_amp=0;
expected_mean=0;
expected_sigma=0;
ui->Info_label_2->setText("Gaus Amplitude [nA] " + QString::number(expected_amp) + "\n \n Gaus Mean [mm] " + QString::number(expected_mean)+ "\n \n Gaus Sigma [mm] " + QString::number(expected_sigma) + "\n \n Scale (approx.) " + QString::number(0));
Draw_Scan_area();
}
void MainWindow:: FitGaus(){
float max=0,temp=0;
int max_coordinate;
const QCPDataMap *dataMap= ui->Scan_area->graph(0)->data();
if (dataMap->empty()){
WriteDebugMSG("No Scan found \n");
return;
}
QMap<double,QCPData>::const_iterator i=dataMap->constBegin();
int size =dataMap->size(),j=0;
float *Graph_Coordinate= new float[size];
float *Graph_Current= new float[size];
for (i=dataMap->constBegin();i!=dataMap->constEnd();i++){
Graph_Current[j] = i.value().value ;
Graph_Coordinate[j] = i.value().key ;
j++;
}
qsrand(QDateTime::currentMSecsSinceEpoch());
float fit_ampl[8]={18,19,20,20,0,0,0,0};
float fit_mean[8]={48,50,52,49,0,0,0,0};
float fit_sigma[8]={40,50,45,55,0,0,0,0};
if (expected_amp==0 && expected_mean==0 && expected_sigma==0){
for (int i=0;i<size;i++){
if (Graph_Current[i]>max){
max= Graph_Current[i];
max_coordinate=i;
}
}
expected_amp=Graph_Current[max_coordinate];
expected_mean=Graph_Coordinate[max_coordinate];
float first=Graph_Coordinate[0];
float second=Graph_Coordinate[size-1];
int flag=0;
for(int i=0;i<size;i++){
if(Graph_Current[i]>=max/2. && flag==0){
first=Graph_Coordinate[i];
flag=1;
continue;
}
if( Graph_Current[i]<=max/2. && flag==1){
second=Graph_Coordinate[i];
break;
}
}
expected_sigma=(second-first)/2.355;
WriteDebugMSG("Expected Sigma "+ QString::number(expected_sigma)+ " amp "+ QString::number(expected_amp)+" mean "+ QString::number(expected_mean) );
}
//we need to have 4 random values of parameters. amplitude is always fixed
for (int i=0;i<4;i++){
// qsrand(static_cast<quint64>(QTime::currentTime().msecsSinceStartOfDay())+i);
int sigma_rnd = qrand();
int mean_rnd =qrand();
fit_ampl[i]=expected_amp+expected_amp*(qrand() % 3 -1)/100;// 3%
fit_sigma[i]=expected_sigma+expected_sigma*(sigma_rnd % 11 -5)/100.; // 5%
fit_mean[i]=expected_mean+4.*mean_rnd/RAND_MAX - 2; // 2 mm
//WriteDebugMSG("sigma_rnd "+ QString::number(sigma_rnd) + " mean_rnd "+QString::number(mean_rnd) +"\n" );
//WriteDebugMSG("sigma variation "+ QString::number((sigma_rnd % 11 -5)/100.) + " mean variation "+QString::number(4.*mean_rnd/RAND_MAX - 2) +"\n" );
//WriteDebugMSG("fit_sigma[i]: "+ QString::number(fit_sigma[i]-expected_sigma) + " fit_mean "+QString::number(fit_mean[i]-expected_mean) +"\n" );
}
if (limit_range_random>5) limit_range_random--; //aid 6Feb_2020
float k=0, e=0.01, alpha=1, beta=0.5, gamma=2.9,sum=0;
while (k<50){
for (int i=0;i<4;i++){
for (int j=0;j<3;j++){
if (Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[j],fit_mean[j],fit_sigma[j],size)<Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[j+1],fit_mean[j+1],fit_sigma[j+1],size)){
temp=fit_ampl[j];
fit_ampl[j]=fit_ampl[j+1];
fit_ampl[j+1]=temp;
temp=fit_sigma[j];
fit_sigma[j]=fit_sigma[j+1];
fit_sigma[j+1]=temp;
temp=fit_mean[j];
fit_mean[j]=fit_mean[j+1];
fit_mean[j+1]=temp;
}
}
}
// 4 - best, 1 - worst
// find center of mass
fit_ampl[4]=0;
fit_sigma[4]=0;
fit_mean[4]=0;
for (int i=1;i<4;i++){ //all without wrost one
fit_ampl[4]+=fit_ampl[i];
fit_sigma[4]+=fit_sigma[i];
fit_mean[4]+=fit_mean[i];
}
fit_ampl[4]/=3;
fit_sigma[4]/=3;
fit_mean[4]/=3;
sum=0;
for (int i=0;i<4;i++){
sum+= pow((Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[i],fit_mean[i],fit_sigma[i],size) - Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[4],fit_mean[4],fit_sigma[4],size)),2);
}
sum=sqrt(sum)/4;
if (sum<=e){
break;
}
// reflection
fit_ampl[5]=fit_ampl[4] + alpha*(fit_ampl[4]-fit_ampl[0]);
fit_sigma[5]=fit_sigma[4] + alpha*(fit_sigma[4]-fit_sigma[0]);
fit_mean[5]=fit_mean[4] + alpha*(fit_mean[4]-fit_mean[0]);
if (Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[5],fit_mean[5],fit_sigma[5],size)<=Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[3],fit_mean[3],fit_sigma[3],size)){
fit_ampl[6]=fit_ampl[4] + gamma*(fit_ampl[5]-fit_ampl[4]);
fit_sigma[6]=fit_sigma[4] + gamma*(fit_sigma[5]-fit_sigma[4]);
fit_mean[6]=fit_mean[4] + gamma*(fit_mean[5]-fit_mean[4]);
if (Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[6],fit_mean[6],fit_sigma[6],size)<Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[3],fit_mean[3],fit_sigma[3],size)){
fit_ampl[0]=fit_ampl[6];
fit_sigma[0]=fit_sigma[6];
fit_mean[0]=fit_mean[6];
}else{
fit_ampl[0]=fit_ampl[5];
fit_sigma[0]=fit_sigma[5];
fit_mean[0]=fit_mean[5];
}
k++;
continue;
}
if ((Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[2],fit_mean[2],fit_sigma[2],size)<Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[5],fit_mean[5],fit_sigma[5],size)) && (Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[5],fit_mean[5],fit_sigma[5],size)<=Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[0],fit_mean[0],fit_sigma[0],size))){
fit_ampl[7]=fit_ampl[4] + beta*(fit_ampl[0]-fit_ampl[4]) ;
fit_sigma[7]=fit_sigma[4] + beta*(fit_sigma[0]-fit_sigma[4]);
fit_mean[7]=fit_mean[4] + beta*(fit_mean[0]-fit_mean[4]);
fit_ampl[0]=fit_ampl[7];
fit_sigma[0]=fit_sigma[7];
fit_mean[0]=fit_mean[7];
k++;
continue;
}
if ((Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[3],fit_mean[3],fit_sigma[3],size)<Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[5],fit_mean[5],fit_sigma[5],size)) && (Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[5],fit_mean[5],fit_sigma[5],size)<=Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[2],fit_mean[2],fit_sigma[2],size))){
fit_ampl[0]=fit_ampl[5];
fit_sigma[0]=fit_sigma[5];
fit_mean[0]=fit_mean[5];
k++;
continue;
}
if (Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[5],fit_mean[5],fit_sigma[5],size)>Les_sqrt(Graph_Coordinate,Graph_Current,fit_ampl[0],fit_mean[0],fit_sigma[0],size)){
for (int i=0;i<4;i++){
fit_ampl[i]=fit_ampl[3]+0.5*(fit_ampl[i]-fit_ampl[3]);
fit_sigma[i]=fit_sigma[3]+0.5*(fit_sigma[i]-fit_sigma[3]);
fit_mean[i]=fit_mean[3]+0.5*(fit_mean[i]-fit_mean[3]);
}
k++;
continue;
}
k++;
}
ui->Scan_area->axisRect()->setupFullAxesBox();
expected_amp=fit_ampl[4];
expected_sigma=fit_sigma[4];
expected_mean=fit_mean[4];
//WriteDebugMSG("Results Expected Sigma "+ QString::number(expected_sigma)+ " amp "+ QString::number(expected_amp)+" mean "+ QString::number(expected_mean) );
if (ui->AxisX_Button->isChecked())
GausScale=fit_ampl[4]*exp(-0.5*pow((ui->spinBox_HereX->value()-fit_mean[4]),2)/pow(fit_sigma[4],2)) / (fit_ampl[4]*exp(-0.5*pow((ui->spinBox_MoveX->value()-fit_mean[4]),2)/pow(fit_sigma[4],2)));
else
GausScale=fit_ampl[4]*exp(-0.5*pow((ui->spinBox_HereY->value()-fit_mean[4]),2)/pow(fit_sigma[4],2)) / (fit_ampl[4]*exp(-0.5*pow((ui->spinBox_MoveY->value()-fit_mean[4]),2)/pow(fit_sigma[4],2)));
ui->Info_label_2->setText("Gaus Amplitude [nA] " + QString::number(expected_amp) + "\n \n Gaus Mean [mm] " + QString::number(expected_mean)+ "\n \n Gaus Sigma [mm] " + QString::number(expected_sigma) + "\n \n Scale (approx.) " + QString::number(GausScale));
float step = (ui->spinBox_ScanMax->value() - ui->spinBox_ScanMin->value())/100.;
qDebug()<<"Step"<< step;
qDebug()<<" MAX: "<<ui->spinBox_ScanMax->value() <<" MIN: "<<ui->spinBox_ScanMin->value();
float coordinate=ui->spinBox_ScanMin->value();
ui->Scan_area->graph(1)->setPen(QPen(QColor(Qt::red)));
ui->Scan_area->graph(1)->clearData();
qDebug("Im plotting!");
for (int i=1;i<100;i++){
ui->Scan_area->graph(1)->addData(coordinate,fit_ampl[4]*exp(-0.5*pow((coordinate-fit_mean[4]),2)/pow(fit_sigma[4],2)));
coordinate+=step;
}
ui->Scan_area->graph(1)->setAntialiased(false); // Dummy solution to avoid additional points for the scan plot
Draw_Scan_area();
}
float Les_sqrt (float *x, float *y, float ampl, float mean, float sigma, int size){
float ans=0;
for (int i=0;i<size;i++)
{
ans+=pow(y[i]-ampl*exp(-0.5*pow((x[i]-mean),2)/pow(sigma,2)),2); \
}
return ans;
}
void MainWindow:: OPENCLOSE_ports(int state,QString MCL_name,QString Degrader_name,QString UNIDOS_name)
{
qDebug()<<"OpenPorts with state"<<state<< " "<<MCL_name<<" "<<Degrader_name<<" "<<UNIDOS_name;
if (state!=ConnectionState)
{
qDebug()<<"Inside"<<state<< ConnectionState;
if ( (state & 1) != (ConnectionState & 1))
{
qDebug()<<"MCL"<<(state & 1);
emit RunMCL(state & 1,MCL_name);
MCL_port_name=MCL_name;
}
if ( ((state & 2) >> 1) != ((ConnectionState & 2) >> 1) )
{
emit RunDegrader((state & 2) >> 1,Degrader_name);
Degrader_port_name=Degrader_name;
}
if (((state & 4) >> 2) != ((ConnectionState & 4) >> 2))
{
emit RunUNIDOS((state & 4) >> 2 ,UNIDOS_name);
UNIDOS_port_name=UNIDOS_name;
}
ConnectionState=state;
}
}
void MainWindow:: SetupScanRange()
{
if (ui->AxisX_Button->isChecked())
{
ui->spinBox_ScanMax->setMaximum(AXIS_RANGEX);
ui->spinBox_ScanMin->setMaximum(AXIS_RANGEX-ui->spinBox_Step->value()-1);
ui->spinBox_FixPosition->setMaximum(AXIS_RANGEY);
}
else
{
ui->spinBox_ScanMax->setMaximum(AXIS_RANGEY);
ui->spinBox_ScanMin->setMaximum(AXIS_RANGEY-ui->spinBox_Step->value()-1);
ui->spinBox_FixPosition->setMaximum(AXIS_RANGEX);
}
// qDebug("ScanRangesWasChanged");
}
void MainWindow:: SetupCalibration()
{
ui->label_calibration_state->setStyleSheet("QLabel { background-color : Green; font-size: 11pt;font-weight: bold;}");
ui->label_calibration_state->setText("CALIBRATION ON");
qDebug()<<"Let`s get started calibratoiJK!";
emit StartCalibration();
}
void MainWindow:: BeamScanState(void)
{
ScanState=0;
ui->label_ScaningState->setStyleSheet("QLabel { font-size: 11pt;font-weight: bold;}");
ui->label_ScaningState->setAlignment(Qt::AlignCenter);
ui->label_ScaningState->setText("Stopped");
}
void MainWindow:: BeamScanSetup(void){
if (!PositionErrorState)
{
ui->Scan_area->graph(0)->clearData();
ui->Scan_area->graph(1)->clearData();
ui->Scan_area->graph(1)->setAntialiased(true);
expected_amp=0;
expected_mean=0;
expected_sigma=0;
ScanArea_Max=1e-15; //AID!!!!!!!!
ui->label_ScaningState->setStyleSheet("QLabel { font-size: 11pt;font-weight: bold;}");
ui->label_ScaningState->setAlignment(Qt::AlignCenter);
ui->label_ScaningState->setText("Ongoing");
ScanState=1;
emit BeamScanRun(ui->AxisX_Button->isChecked(),ui->spinBox_ScanMin->value(),ui->spinBox_ScanMax->value(),ui->spinBox_Step->value(),ui->spinBox_FixPosition->value());
// ui->AxisX_Button->isChecked(),ui->spinBox_ScanMin->value(),ui->spinBox_ScanMax->value(),ui->spinBox_Step->value());
}
}
void MainWindow:: SaveFit(){
//QString FileName="/"+QString::number(timestamp_begin)+"/FIT_"+QString::number(QDateTime::currentDateTime().toTime_t());
QString FileName=DirName+"\\FIT_"+QString::number(QDateTime::currentDateTime().toTime_t());
ui->Scan_area->savePng(FileName+".png");
FileName+=".txt";
QFile file( FileName );
if ( file.open(QIODevice::ReadWrite) )
{
QTextStream stream( &file );
stream <<"Amplitude; Mean; Sigma; Scale \r" << endl;
stream << expected_amp<<"; "<<expected_mean<<"; "<<expected_sigma<<"; "<<GausScale << endl;
}
}
void MainWindow:: PortConnectionError(void)
{
ui->label_error_state->setStyleSheet("QLabel { background-color : yellow;}");
ui->label_error_state->setAlignment(Qt::AlignCenter);
ui->label_error_state->setText("Error in Connection");
}
void MainWindow:: LimitSwitchError(void)
{
ui->label_error_state_2->setStyleSheet("QLabel { background-color : yellow;}");
ui->label_error_state_2->setAlignment(Qt::AlignCenter);
ui->label_error_state_2->setText("Limit Switch Error");
}
void MainWindow:: MotorMovingError(bool state)
{
if (state)
{
ui->label_error_state_3->setStyleSheet("QLabel { background-color : yellow;}");
ui->label_error_state_3->setAlignment(Qt::AlignCenter);
ui->label_error_state_3->setText("Motor MOVING");
}
else
{
ui->label_error_state_3->setStyleSheet("QLabel { background-color : none;}");
ui->label_error_state_3->setAlignment(Qt::AlignCenter);
ui->label_error_state_3->setText("Motor STOP");
}
}
void MainWindow::closeEvent(QCloseEvent* event)
{
if ( timer->isActive() )
{
QMessageBox::warning(0,"Warning", "Close all operations!");
event->ignore();
}
else
event->accept();
}
void MainWindow:: Label_device_state (QSerialPort* Port,bool state){
if (state)
{
if (MCL_port_name==Port->portName())
{
ui->label_MCL_state->setStyleSheet("QLabel { background-color : yellow; font-size: 11pt;font-weight: bold;}");
ui->label_MCL_state->setText("MCL is READY");
emit NanotechStartSettings();
}
else if ( UNIDOS_port_name==Port->portName())
{
ui->label_UNIDOS_state->setStyleSheet("QLabel { background-color : yellow; font-size: 11pt;font-weight: bold;}");
ui->label_UNIDOS_state->setText("UNIDOS is READY");
}
else WriteDebugMSG("Error in Label_device_state");
}
else {
if (MCL_port_name==Port->portName())
{
ui->label_MCL_state->setStyleSheet("QLabel { background-color : red;font-size: 12pt;font-weight: bold;}");
ui->label_MCL_state->setText("MCL is NOT READY");
}
else if (UNIDOS_port_name==Port->portName())
{
ui->label_UNIDOS_state->setStyleSheet("QLabel { background-color : red; font-size: 11pt;font-weight: bold;}");
ui->label_UNIDOS_state->setText("UNIDOS is NOT READY");
}
else WriteDebugMSG("Error in Label_device_state");
}
}
void MainWindow:: CalcBeamParams (void){
int konfigurace = (int) (ui->checkBox_Degrader_05->isChecked())*2 + (int) (ui->checkBox_Degrader_1->isChecked()) *4 + (int) (ui->checkBox_Degrader_2->isChecked()) *8;
//qDebug("konfigurace is %d",konfigurace);
if(konfigurace == 0 ){ //no plate
CalibrationConstant = 15873; //cm-2 s-1 pA-1
pEnergyAtSample = 32.3f;
LET=0.013932
;
}else if(konfigurace == 2 ){ //0.5 mm
CalibrationConstant = 16011.; //cm-2 s-1 pA-1
pEnergyAtSample = 30.2f;
LET=0.014688;
}else if(konfigurace == 4 ){ //1 mm
CalibrationConstant = 15189.; //cm-2 s-1 pA-1
pEnergyAtSample = 28.1f;
LET=0.0155504;
}else if(konfigurace == 6 ){ //0.5+1 mm
CalibrationConstant = 13964.; //cm-2 s-1 pA-1
pEnergyAtSample = 25.8f;
LET=0.0166364;
}else if(konfigurace == 8 ){ //2 mm
CalibrationConstant = 12971.; //cm-2 s-1 pA-1
pEnergyAtSample = 24.0f;
LET=0.017618;
}else if(konfigurace == 10 ){ //0.5+2 mm
CalibrationConstant = 11463.; //cm-2 s-1 pA-1
pEnergyAtSample = 21.4f;
LET=0.0192876;
}else if(konfigurace == 12 ){ //1+2 mm
CalibrationConstant = 10324.; //cm-2 s-1 pA-1
pEnergyAtSample = 18.5f;
LET=0.0216025;
}else if(konfigurace == 14 ){ //0.5+1+2 mm
CalibrationConstant = 8336.; //cm-2 s-1 pA-1
pEnergyAtSample = 15.1f;
LET=0.025295;
}
//LET= Linear_interplotation(pEnergyAtSample);
//LET = 0.018;
ui->Info_label_1->setText("k [pA^-1 cm^-2 s^-1]= " + QString::number(CalibrationConstant) + "\n E of p hitting sample [MeV]= " + QString::number(pEnergyAtSample) + " \n LET in Si [MeV/ (mg/cm2)]= ");
ui->doubleSpinBox_LET->setValue(LET);
}
float MainWindow:: Linear_interplotation(double E)
{
const int size =25;
double x[size] = {5,5.5,6,6.5,7,8,9,10,11,12,13,14,15,16,17,18,20,22.5,25,27.5,30,32.5,35,37.5,40};
double y[size] = {5.866E-02,5.466E-02,5.124E-02,4.826E-02,4.564E-02,4.125E-02,3.771E-02,3.479E-02,3.233E-02,3.023E-02,2.841E-02,2.682E-02,2.542E-02,2.417E-02,2.305E-02,2.204E-02,2.029E-02,1.850E-02,1.703E-02,1.580E-02,1.476E-02,1.386E-02,1.307E-02,1.238E-02,1.177E-02};
double l,L=0;
for (int i=0;i<size;i++)
{
if (E>x[i])
L=y[i]+(y[i]-y[i+1])/(x[i]-x[i+1])*(E-x[i]);
}
return L;
}
void MainWindow:: Show_Nanotec_state(bool ReadyX,bool ZeroX,bool PErrorX,bool ReadyY,bool ZeroY,bool PErrorY)
{
ui->checkBox_ReadyX->setChecked(ReadyX);
ui->checkBox_ReadyY->setChecked(ReadyY);
ui->checkBox_ZeroX->setChecked(ZeroX);
ui->checkBox_ZeroY->setChecked(ZeroY);
ui->checkBox_ErrorX->setChecked(PErrorX);
ui->checkBox_ErrorY->setChecked(PErrorY);
PositionErrorState=PErrorX | PErrorY;
if (PositionErrorState==0)
{
ui->label_error_state_2->setStyleSheet("QLabel { background-color : none;}");
ui->label_error_state_2->setText("Limit Switch OK");
}
qDebug()<<"Test:" <<PositionErrorState;
}
void MainWindow:: Start_timer(bool state){
// qDebug("Button is toggled");
if (state){
ui->BeamMonitoring_button->setText("STOP Beam Monitoring");
flux=0;
fluence = 0;
total_fluence = 0;
DoseInSilicone =0;
ui->Monitoring_area->graph(0)->clearData();
// std:: string FileName= "LOG_"+QDateTime::currentDateTime().toTime_t()+".txt";
LogFileName=DirName+ "\\LOG_"+QString::number(QDateTime::currentDateTime().toTime_t())+".txt";