CI.yml

name: CI
on: [push, pull_request, release]    # runs on all branches
env:
  PYTHON_VERSION: 3.12

jobs:
  test:
    runs-on: ubuntu-latest

    steps:

    - uses: actions/checkout@v4

    - name: Set up Python
      uses: actions/setup-python@v5
      with:
          python-version: ${{ env.PYTHON_VERSION }}

    - name: Install and configure Poetry
      uses: snok/install-poetry@v1
      with:
        virtualenvs-create: false

    - name: Install biopeaks
      run: poetry install --no-interaction --with main,dev

    - name: Install system dependencies for headless testing
      run: sudo ./.devcontainer/install_system_dependencies.sh

    - name: Test and collect coverage
      run: pytest -v --cov-config=.coveragerc --cov-report=xml --cov=biopeaks

    - name: Upload coverage report
      uses: codecov/codecov-action@v4
      with:
        file: ./coverage.xml
        token: ${{ secrets.CODECOV_TOKEN }}


  build_distribution:

    needs: test
    runs-on: ubuntu-latest
    if: github.event_name == 'release' && github.event.action == 'published'

    steps:

    - uses: actions/checkout@v4

    - name: Set up Python
      uses: actions/setup-python@v5
      with:
        python-version: ${{ env.PYTHON_VERSION }}

    - name: Install and configure Poetry
      uses: snok/install-poetry@v1
      with:
        virtualenvs-create: false

    - name: Build and upload distribution
      env:
        PYPI_USERNAME: ${{ secrets.PYPI_USERNAME }}
        PYPI_PASSWORD: ${{ secrets.PYPI_PASSWORD }}
      run:  |
        poetry publish -u $PYPI_USERNAME -p $PYPI_PASSWORD --build