length = 3' in coercion to 'logical(1)

[elizabethmcmillan]

Hi! I'm opening another thread about this issue. Can you please let me know if you have any ideas for how to solve this issue?

I'm getting this error when I run both my data and the test data:

library(Rmagic)
data(magic_testdata)
data_MAGIC <- magic(magic_testdata, genes=c("VIM", "CDH1", "ZEB1"))
Error in is.null(x = genes) || is.na(x = genes) :
'length = 3' in coercion to 'logical(1)'

Thank you for your help!!

[leonardfei]

Hi! I'm opening another thread about this issue. Can you please let me know if you have any ideas for how to solve this issue?

I'm getting this error when I run both my data and the test data:

library(Rmagic)
data(magic_testdata)
data_MAGIC <- magic(magic_testdata, genes=c("VIM", "CDH1", "ZEB1"))
Error in is.null(x = genes) || is.na(x = genes) :
'length = 3' in coercion to 'logical(1)'

Thank you for your help!!

Hello, I met this problem recently, and found the error was referred in the article (https://pmc.ncbi.nlm.nih.gov/articles/PMC10789639/), maybe a R version of incompatible problems, but still an error after I modified version. The description in article is as follows:
Problem 1
Error in is.null (x = genes) || is.na(x = genes) : ‘length = 3’ in coercion to ‘logical(1)’ in Step I when finding the optimal cutoff of highly variable EMT genes.

Potential solution
•This issue is related to the incompatibility of the Rmagic package which is one of the dependencies of RCOMET with the new R version 4.3.1+, please use an alternative R version to fix this issue.

Have you solved the problem now?