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Q: gappedPeak file visualization in IGV and interpretation #105

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olechnwin opened this issue Aug 22, 2023 · 0 comments
Open

Q: gappedPeak file visualization in IGV and interpretation #105

olechnwin opened this issue Aug 22, 2023 · 0 comments
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@olechnwin
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This is a screenshot of my gappedPeak file in IGV.

image

I'm guessing the blue bar is my open chromatin region while the extended line is my nucleosome?
I understand having an open region flanked by nucleosome at both sides. But with this one, why would you have nucleosome, open chromatin, nucleosomes, open region and another nucleosome?
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@olechnwin