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samtools view -H ATACseq.sorted.bam| perl -ne 'if(/^@sq.*?SN:(\w+)\s+LN:(\d+)/){print $1,"\t",$2,"\n"}' > genome.info results in an empty genome.info file
I am using UBUNTU 20.04.5
Does anyone have any suggestion?
The text was updated successfully, but these errors were encountered:
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samtools view -H ATACseq.sorted.bam| perl -ne 'if(/^@sq.*?SN:(\w+)\s+LN:(\d+)/){print $1,"\t",$2,"\n"}' > genome.info
results in an empty genome.info file
I am using UBUNTU 20.04.5
Does anyone have any suggestion?
The text was updated successfully, but these errors were encountered: