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Improve xdr cython #3892

Merged
merged 29 commits into from
Nov 30, 2022
Merged

Improve xdr cython #3892

merged 29 commits into from
Nov 30, 2022

Commits on Oct 28, 2022

  1. incremental improvements to libmdaxdr

    @hmacdope
    hmacdope committed Oct 28, 2022
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  2. fix wrong dims

    @hmacdope
    hmacdope committed Oct 28, 2022
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  3. add boundscheck=False

    @hmacdope
    hmacdope committed Oct 28, 2022
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  4. slight improvement

    @hmacdope
    hmacdope committed Oct 28, 2022
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Commits on Nov 3, 2022

  1. move to module level decls

    @hmacdope
    hmacdope committed Nov 3, 2022
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  2. try read_direct

    @hmacdope
    hmacdope committed Nov 3, 2022
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  3. fix frame iteration

    @hmacdope
    hmacdope committed Nov 3, 2022
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Commits on Nov 6, 2022

  1. use direct read into array for trr

    @hmacdope
    hmacdope committed Nov 6, 2022
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  2. experimental trr read

    @hmacdope
    hmacdope committed Nov 6, 2022
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  3. Revert "experimental trr read" 

    This reverts commit 943e699.
    @hmacdope
    hmacdope committed Nov 6, 2022
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  4. add pxd for libmdaxdr

    @hmacdope
    hmacdope committed Nov 6, 2022
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Commits on Nov 9, 2022

  1. make timestep fat

    @hmacdope
    hmacdope committed Nov 9, 2022
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  2. add explanation

    @hmacdope
    hmacdope committed Nov 9, 2022
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Commits on Nov 12, 2022

  1. Merge remote-tracking branch 'upstream/develop' into improve_xdr_cython

    @hmacdope
    hmacdope committed Nov 12, 2022
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  2. change to xvf

    @hmacdope
    hmacdope committed Nov 12, 2022
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Commits on Nov 15, 2022

  1. add some notes

    @hmacdope
    hmacdope committed Nov 15, 2022
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  2. test branching on ts.positions in _read_next_timestep

    @hmacdope
    hmacdope committed Nov 15, 2022
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  3. add CHANGELOG

    @hmacdope
    hmacdope committed Nov 15, 2022
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  4. fix docs

    @hmacdope
    hmacdope committed Nov 15, 2022
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Commits on Nov 16, 2022

  1. add cdef

    @hmacdope
    hmacdope committed Nov 16, 2022
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Commits on Nov 20, 2022

  1. Update package/MDAnalysis/lib/formats/libmdaxdr.pxd 

    Co-authored-by: Oliver Beckstein <orbeckst@gmail.com>
    @hmacdope @orbeckst
    hmacdope and orbeckst committed Nov 20, 2022
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  2. fix inheritance

    @hmacdope
    hmacdope committed Nov 20, 2022
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  3. add read failure error

    @hmacdope
    hmacdope committed Nov 20, 2022
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Commits on Nov 23, 2022

  1. fix changelog

    @hmacdope
    hmacdope committed Nov 23, 2022
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  2. add to libmdanalysis

    @hmacdope
    hmacdope committed Nov 23, 2022
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  3. fix error code checking

    @hmacdope
    hmacdope committed Nov 23, 2022
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Commits on Nov 29, 2022

  1. Merge branch 'develop' into improve_xdr_cython

    @orbeckst
    orbeckst committed Nov 29, 2022
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  2. Consolidate licenses across top directory, testsuite and package (MDA… 

    …nalysis#3939)

* ensure that the same LICENSE file appears everywhere
* update CHANGELOG
    @hmacdope
    hmacdope committed Nov 29, 2022
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  3. Merge remote-tracking branch 'upstream/develop' into improve_xdr_cython

    @hmacdope
    hmacdope committed Nov 29, 2022
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