feat: add input_stream and bump version
#2304
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Linux | |
| on: | |
| push: | |
| branches: | |
| - '**' | |
| paths: | |
| - '**' | |
| tags: | |
| - 'v*.*.*' | |
| pull_request: | |
| branches: | |
| - 'master' | |
| paths: | |
| - '**' | |
| jobs: | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| timeout-minutes: 60 | |
| env: | |
| COVERAGE_PROCESS_START: "${{ github.workspace }}/.coveragerc" | |
| defaults: | |
| run: | |
| shell: bash | |
| strategy: | |
| matrix: | |
| julia-version: ['1'] | |
| python-version: ['3.12'] | |
| os: [ubuntu-latest] | |
| test-id: [main] | |
| include: | |
| - julia-version: '1.10' | |
| python-version: '3.10' | |
| os: ubuntu-latest | |
| test-id: include | |
| - julia-version: '1' | |
| python-version: '3.12' | |
| os: ubuntu-latest | |
| test-id: include | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Set up Julia" | |
| uses: julia-actions/setup-julia@v2 | |
| with: | |
| version: ${{ matrix.julia-version }} | |
| - name: "Cache Julia" | |
| uses: julia-actions/cache@v2 | |
| with: | |
| cache-name: ${{ matrix.os }}-test-${{ matrix.julia-version }}-${{ matrix.python-version }} | |
| cache-packages: false | |
| - name: "Set up Python" | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| - name: "Install PySR" | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install '.[dev]' | |
| python -c 'import pysr' | |
| - name: "Assert Julia version" | |
| if: ${{ matrix.julia-version != '1'}} | |
| run: python3 -c "from pysr import jl; assert jl.VERSION.major == jl.seval('v\"${{ matrix.julia-version }}\"').major; assert jl.VERSION.minor == jl.seval('v\"${{ matrix.julia-version }}\"').minor" | |
| - name: "Set up coverage for subprocesses" | |
| run: echo 'import coverage; coverage.process_startup()' > "${{ github.workspace }}/sitecustomize.py" | |
| - name: "Run tests" | |
| run: coverage run -m pysr test main,cli,startup | |
| - name: "Run JAX tests" | |
| run: coverage run --append -m pysr test jax | |
| if: ${{ matrix.test-id == 'main' }} | |
| - name: "Run Torch tests" | |
| run: coverage run --append -m pysr test torch | |
| if: ${{ matrix.test-id == 'main' }} | |
| - name: "Coveralls" | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| COVERALLS_FLAG_NAME: test-${{ matrix.julia-version }}-${{ matrix.python-version }}-${{ matrix.test-id }} | |
| COVERALLS_PARALLEL: true | |
| run: coveralls --service=github | |
| dev_install: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: ['ubuntu-latest'] | |
| python-version: ['3.12'] | |
| julia-version: ['1'] | |
| include: | |
| - os: ubuntu-latest | |
| python-version: '3.10' | |
| julia-version: '1.10' | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| - name: "Install PySR" | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install '.[dev]' | |
| - name: "Run development test" | |
| run: PYSR_TEST_JULIA_VERSION=${{ matrix.julia-version }} PYSR_TEST_PYTHON_VERSION=${{ matrix.python-version }} python -m pysr test dev | |
| conda_test: | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| python-version: ['3.12'] | |
| os: ['ubuntu-latest'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Cache conda" | |
| uses: actions/cache@v4 | |
| env: | |
| CACHE_NUMBER: 0 | |
| with: | |
| path: ~/conda_pkgs_dir | |
| key: ${{ runner.os }}-conda-${{ env.CACHE_NUMBER }}-${{ hashFiles('environment.yml') }} | |
| - name: "Set up Conda" | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-variant: Miniforge3 | |
| miniforge-version: latest | |
| auto-activate-base: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: pysr-test | |
| environment-file: environment.yml | |
| - name: "Cache Julia" | |
| uses: julia-actions/cache@v2 | |
| with: | |
| cache-name: ${{ matrix.os }}-conda-${{ matrix.python-version }} | |
| cache-packages: false | |
| - name: "Install PySR" | |
| run: | | |
| python3 -m pip install . | |
| python3 -c 'import pysr' | |
| - name: "Run tests" | |
| run: cd /tmp && python -m pysr test main | |
| coveralls: | |
| name: Indicate completion to coveralls.io | |
| needs: | |
| - test | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| container: python:3-slim | |
| steps: | |
| - name: Finished | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| pip install coveralls | |
| coveralls --finish | |
| types: | |
| name: Check types | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| matrix: | |
| python-version: | |
| - '3.12' | |
| - '3.10' | |
| os: ['ubuntu-latest'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Set up Python" | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| - name: "Install PySR and all dependencies" | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install '.[dev]' | |
| - name: "Run mypy" | |
| run: python -m mypy --install-types --non-interactive pysr | |
| if: ${{ matrix.python-version != '3.10' }} | |
| - name: "Run compatible mypy" | |
| run: python -m mypy --ignore-missing-imports pysr | |
| if: ${{ matrix.python-version == '3.10' }} | |
| beartype: | |
| name: Test with beartype | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| env: | |
| PYSR_USE_BEARTYPE: "1" | |
| strategy: | |
| matrix: | |
| python-version: ['3.12'] | |
| os: ['ubuntu-latest'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: "Set up Python" | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: pip | |
| - name: "Install PySR and all dependencies" | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install '.[dev]' | |
| - name: "Run tests" | |
| run: python -m pysr test main,jax,torch |