build.yml

name: build-conda-environments

on:
  push:
    branches:
      - main
  pull_request_target:
    branches:
      - main

jobs:
  build-environments:
    runs-on: ubuntu-latest
    strategy:
      matrix:
        environment:
            - workflow/envs/antismash.yaml
            - workflow/envs/antismash_v6.yaml
            - workflow/envs/arts.yaml
            - workflow/envs/automlst_wrapper.yaml
            - workflow/envs/bgc_analytics.yaml
            - workflow/envs/bigscape.yaml
            - workflow/envs/bigslice.yaml
            - workflow/envs/checkm.yaml
            - workflow/envs/cblaster.yaml
            - workflow/envs/clinker.yaml
            - workflow/envs/dbt-duckdb.yaml
            - workflow/envs/deeptfactor.yaml
            - workflow/envs/eggnog.yaml
            - workflow/envs/fastani.yaml
            - workflow/envs/gtdbtk.yaml
            - workflow/envs/mash.yaml
            - workflow/envs/mmseqs2.yaml
            - workflow/envs/prokka.yaml
            - workflow/envs/r_notebook.yaml
            - workflow/envs/roary.yaml
            - workflow/envs/seqfu.yaml
            - workflow/envs/utilities.yaml
            - workflow/envs/lsabgc.yaml
    steps:
    - name: Checkout repository and submodules
      uses: actions/checkout@v4
      with:
        submodules: recursive
    - name: Set up Micromamba
      uses: mamba-org/setup-micromamba@v1
      with:
        micromamba-version: '1.5.0-1'
        environment-file: ${{ matrix.environment }}
        init-shell: bash
        cache-environment: true
        post-cleanup: 'all'
    - name: Test conda environment
      run: echo "Testing conda environment"
    - name: Fail build if tests fail
      run: exit 1
      if: ${{ job.status != 'success' }}