diff --git a/_includes/image_inspection_and_presentation/inspect_collagen_data.md b/_includes/image_inspection_and_presentation/inspect_collagen_data.md index 7cc88489..17a14e28 100644 --- a/_includes/image_inspection_and_presentation/inspect_collagen_data.md +++ b/_includes/image_inspection_and_presentation/inspect_collagen_data.md @@ -6,7 +6,7 @@ The below drop down menu allows you to perfom all steps in one go, which require mentioned in this module's prerequisites. If you are a beginner, we recommend first learning the individual steps - - [Inspect the image pixel values](/pixels/index.html#inspect_collagen) + - [Inspect the image pixel values](/training-resources/pixels/index.html#inspect_collagen) - [Adjust the image display](/lut/index.html#configure) - [Inspect image metadata and datatype](/datatypes/index.html#metadata_and_datatype) - [Inspect microscope settings metadata](/image_file_formats/index.html#open) diff --git a/_modules/lut.md b/_modules/lut.md index d77d1f6c..740eaac4 100644 --- a/_modules/lut.md +++ b/_modules/lut.md @@ -19,7 +19,7 @@ concept_map: > V("Pixel value") --> L("Lookup table (LUT)") L --> |does not change|V L --> C("Color & Brightness") - L -->|often is| A("Adjustable") + L --> A("Adjustable") figure: /figures/lut.png figure_legend: diff --git a/_modules/pixels.md b/_modules/pixels.md index e80ed8b7..873e4d47 100644 --- a/_modules/pixels.md +++ b/_modules/pixels.md @@ -1,7 +1,7 @@ --- title: Digital image basics layout: module -permalink: /pixels/ +permalink: /training-resources/pixels/ prerequisites: objectives: diff --git a/image_data/image_inspection_and_presentation/figure_creation_images/0h_collagen.svg b/figures/resources/image_inspection_and_presentation/0h_collagen.svg similarity index 100% rename from image_data/image_inspection_and_presentation/figure_creation_images/0h_collagen.svg rename to figures/resources/image_inspection_and_presentation/0h_collagen.svg diff --git a/image_data/image_inspection_and_presentation/figure_creation_images/0h_collagen-1.svg b/figures/resources/image_inspection_and_presentation/0h_collagen_crop.svg similarity index 100% rename from image_data/image_inspection_and_presentation/figure_creation_images/0h_collagen-1.svg rename to figures/resources/image_inspection_and_presentation/0h_collagen_crop.svg diff --git a/image_data/image_inspection_and_presentation/figure_creation_images/0h_composite (RGB).svg 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