Plugin_Dev_Steps_Commands.txt

Download galaxy_workflow into "/Users/jeevka/IRIDA_Plugins/"
cd /Users/jeevka/IRIDA_Plugins/
java -jar irida-wf-ga2xml-1.2.1-standalone.jar -n IRMA -t IRMA -W 1.2.0 -o output -i IRMA1p2.ga
mkdir irida/irida-plugin-nvi-irma_1.2.0
cp -r irida/irida-plugin-nvi-respointfinder_4.4.2/* irida/irida-plugin-nvi-irma_1.2.0/

cp output/IRMA/1.2.0/* irida/irida-plugin-nvi-irma_1.2.0/src/main/resources/workflows/3.0.0/
mv 3.0.0/ 1.2.0
cd irida/irida-plugin-nvi-irma_1.2.0/src/main/resources/workflows/
cd irida/irida-plugin-nvi-irma_1.2.0/src/java/ca/corefacility/bioinformatics/irida/plugins/
mv ResPointFinderPlugin.java  IrmaPlugin.java
rm ResPointFinderPluginUpdater.java


Modify 
1. pom.xml
2. XML file in irida/irida-plugin-nvi-respointfinder_4.4.2/src/main/resources/workflows/3.0.0/
3. Modify the messages file in irida/irida-plugin-nvi-respointfinder_4.4.2/src/main/resources/workflows/3.0.0/
4. Modify the Java files in 

Build: 
mvn clean package

scp target/ResPointFinder3-3.0.0.jar centos@irida.vigasp.vetinst.no:/home/centos/
cp /home/centos/ResPointFinder3-3.0.0.jar /etc/irida/plugins/

systemctl stop tomcat-9.0.43.service