From e26a91ed145b97a558938d6e323234b4ea32b00b Mon Sep 17 00:00:00 2001
From: Frank DeFalco <fdefalco@ohdsi.org>
Date: Tue, 9 Apr 2024 12:43:45 -0400
Subject: [PATCH] merge of main changes

---
 docs/reference/downloadEunomiaData.html |  26 ++--
 docs/reference/exportDataFiles.html     | 114 +++++++++++++++++
 docs/reference/extractLoadData.html     |  61 ++++++---
 docs/reference/getDatabaseFile.html     | 158 ++++++++++++++++++++++++
 docs/reference/loadDataFiles.html       | 129 +++++++++++++++++++
 5 files changed, 458 insertions(+), 30 deletions(-)
 create mode 100644 docs/reference/exportDataFiles.html
 create mode 100644 docs/reference/getDatabaseFile.html
 create mode 100644 docs/reference/loadDataFiles.html
diff --git a/docs/reference/downloadEunomiaData.html b/docs/reference/downloadEunomiaData.html
index 0eab0e8..b9bfb9b 100644
--- a/docs/reference/downloadEunomiaData.html
+++ b/docs/reference/downloadEunomiaData.html
@@ -1,8 +1,5 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Download Eunomia data files
-Download the Eunomia data files from https://github.com/OHDSI/EunomiaDatasets — downloadEunomiaData • Eunomia</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/cosmo/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Download Eunomia data files
-Download the Eunomia data files from https://github.com/OHDSI/EunomiaDatasets — downloadEunomiaData"><meta property="og:description" content="Download Eunomia data files
-Download the Eunomia data files from https://github.com/OHDSI/EunomiaDatasets"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Download Eunomia data files — downloadEunomiaData • Eunomia</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/cosmo/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Download Eunomia data files — downloadEunomiaData"><meta property="og:description" content="Download the Eunomia data files from https://github.com/OHDSI/EunomiaDatasets"><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
 <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
 <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
 <![endif]--></head><body data-spy="scroll" data-target="#toc">
@@ -20,7 +17,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">Eunomia</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">2.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">2.0.0</span>
       </span>
     </div>
 
@@ -32,7 +29,7 @@
   <a href="../news/index.html">Changelog</a>
 </li>
       </ul><ul class="nav navbar-nav navbar-right"><li>
-  <a href="https://ohdsi.github.io/Hades" class="external-link"><img src='https://ohdsi.github.io/Hades/images/hadesMini.png' width=80 height=17 style='vertical-align: top;'></a>
+  <a href="https://ohdsi.github.io/Hades" class="external-link">hadesLogo</a>
 </li>
 <li>
   <a href="https://github.com/OHDSI/Eunomia/" class="external-link">
@@ -49,15 +46,13 @@
       </header><div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
-    <h1>Download Eunomia data files
-Download the Eunomia data files from https://github.com/OHDSI/EunomiaDatasets</h1>
+    <h1>Download Eunomia data files</h1>
     <small class="dont-index">Source: <a href="https://github.com/OHDSI/Eunomia/blob/HEAD/R/EunomiaData.R" class="external-link"><code>R/EunomiaData.R</code></a></small>
     <div class="hidden name"><code>downloadEunomiaData.Rd</code></div>
     </div>
 
     <div class="ref-description">
-    <p>Download Eunomia data files
-Download the Eunomia data files from https://github.com/OHDSI/EunomiaDatasets</p>
+    <p>Download the Eunomia data files from https://github.com/OHDSI/EunomiaDatasets</p>
     </div>
 
     <div id="ref-usage">
@@ -65,7 +60,8 @@ <h1>Download Eunomia data files
 <span>  <span class="va">datasetName</span>,</span>
 <span>  cdmVersion <span class="op">=</span> <span class="st">"5.3"</span>,</span>
 <span>  pathToData <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Sys.getenv.html" class="external-link">Sys.getenv</a></span><span class="op">(</span><span class="st">"EUNOMIA_DATA_FOLDER"</span><span class="op">)</span>,</span>
-<span>  overwrite <span class="op">=</span> <span class="cn">FALSE</span></span>
+<span>  overwrite <span class="op">=</span> <span class="cn">FALSE</span>,</span>
+<span>  verbose <span class="op">=</span> <span class="cn">FALSE</span></span>
 <span><span class="op">)</span></span></code></pre></div>
     </div>
 
@@ -90,6 +86,10 @@ <h2>Arguments</h2>
 <dd><p>Control whether the existing archive file will be overwritten should it already
 exist.</p></dd>
 
+
+<dt>verbose</dt>
+<dd><p>Provide additional logging details during execution.</p></dd>
+
 </dl></div>
     <div id="value">
     <h2>Value</h2>
@@ -112,11 +112,11 @@ <h2>Examples</h2>
 
 
       <footer><div class="copyright">
-  <p></p><p>Developed by Frank DeFalco, Martijn Schuemie, Anthony Sena, Natthawut Adulyanukosol, Star Liu.</p>
+  <p></p><p>Developed by Frank DeFalco, Martijn Schuemie, Anthony Sena, Natthawut Adulyanukosol, Star Liu, Adam Black.</p>
 </div>
 
 <div class="pkgdown">
-  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p>
+  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
 </div>
 
       </footer></div>
diff --git a/docs/reference/exportDataFiles.html b/docs/reference/exportDataFiles.html
new file mode 100644
index 0000000..adbfbca
--- /dev/null
+++ b/docs/reference/exportDataFiles.html
@@ -0,0 +1,114 @@
+<!DOCTYPE html>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Export data files from a database(sqlite or duckdb) — exportDataFiles • Eunomia</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/cosmo/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Export data files from a database(sqlite or duckdb) — exportDataFiles"><meta property="og:description" content="Helper function to export data to csv or parquet files from a database file (sqlite or duckdb)."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
+<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
+<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
+<![endif]--></head><body data-spy="scroll" data-target="#toc">
+    
+
+    <div class="container template-reference-topic">
+      <header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
+  <div class="container">
+    <div class="navbar-header">
+      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
+        <span class="sr-only">Toggle navigation</span>
+        <span class="icon-bar"></span>
+        <span class="icon-bar"></span>
+        <span class="icon-bar"></span>
+      </button>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">Eunomia</a>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">2.0.0</span>
+      </span>
+    </div>
+
+    <div id="navbar" class="navbar-collapse collapse">
+      <ul class="nav navbar-nav"><li>
+  <a href="../reference/index.html">Reference</a>
+</li>
+<li>
+  <a href="../news/index.html">Changelog</a>
+</li>
+      </ul><ul class="nav navbar-nav navbar-right"><li>
+  <a href="https://ohdsi.github.io/Hades" class="external-link">hadesLogo</a>
+</li>
+<li>
+  <a href="https://github.com/OHDSI/Eunomia/" class="external-link">
+    <span class="fab fa-github fa-lg"></span>
+     
+  </a>
+</li>
+      </ul></div><!--/.nav-collapse -->
+  </div><!--/.container -->
+</div><!--/.navbar -->
+
+      
+
+      </header><div class="row">
+  <div class="col-md-9 contents">
+    <div class="page-header">
+    <h1>Export data files from a database(sqlite or duckdb)</h1>
+    <small class="dont-index">Source: <a href="https://github.com/OHDSI/Eunomia/blob/HEAD/R/EunomiaData.R" class="external-link"><code>R/EunomiaData.R</code></a></small>
+    <div class="hidden name"><code>exportDataFiles.Rd</code></div>
+    </div>
+
+    <div class="ref-description">
+    <p>Helper function to export data to csv or parquet files from a database file (sqlite or duckdb).</p>
+    </div>
+
+    <div id="ref-usage">
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">exportDataFiles</span><span class="op">(</span></span>
+<span>  <span class="va">dbPath</span>,</span>
+<span>  <span class="va">outputFolder</span>,</span>
+<span>  outputFormat <span class="op">=</span> <span class="st">"csv"</span>,</span>
+<span>  dbms <span class="op">=</span> <span class="st">"sqlite"</span>,</span>
+<span>  verbose <span class="op">=</span> <span class="cn">FALSE</span></span>
+<span><span class="op">)</span></span></code></pre></div>
+    </div>
+
+    <div id="arguments">
+    <h2>Arguments</h2>
+    <dl><dt>dbPath</dt>
+<dd><p>The path to the source .sqlite or .duckdb file</p></dd>
+
+
+<dt>outputFolder</dt>
+<dd><p>The path to the export destination directory</p></dd>
+
+
+<dt>outputFormat</dt>
+<dd><p>The output format for the files.  Supported formats include csv, parquet.</p></dd>
+
+
+<dt>dbms</dt>
+<dd><p>The file-based database system to use: 'sqlite' (default) or 'duckdb'</p></dd>
+
+
+<dt>verbose</dt>
+<dd><p>Boolean argument controlling verbose debugging output</p></dd>
+
+</dl></div>
+
+  </div>
+  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+    <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2>
+    </nav></div>
+</div>
+
+
+      <footer><div class="copyright">
+  <p></p><p>Developed by Frank DeFalco, Martijn Schuemie, Anthony Sena, Natthawut Adulyanukosol, Star Liu, Adam Black.</p>
+</div>
+
+<div class="pkgdown">
+  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
+</div>
+
+      </footer></div>
+
+  
+
+
+  
+
+  </body></html>
+
diff --git a/docs/reference/extractLoadData.html b/docs/reference/extractLoadData.html
index 3491295..cbeca50 100644
--- a/docs/reference/extractLoadData.html
+++ b/docs/reference/extractLoadData.html
@@ -1,10 +1,10 @@
 <!DOCTYPE html>
-<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Extract the Eunomia data files and load into a SQLite database
-Extract files from a .ZIP file and creates a SQLite OMOP CDM database that is then stored in the
-same directory as the .ZIP file. — extractLoadData • Eunomia</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/cosmo/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Extract the Eunomia data files and load into a SQLite database
-Extract files from a .ZIP file and creates a SQLite OMOP CDM database that is then stored in the
-same directory as the .ZIP file. — extractLoadData"><meta property="og:description" content="Extract the Eunomia data files and load into a SQLite database
-Extract files from a .ZIP file and creates a SQLite OMOP CDM database that is then stored in the
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Extract the Eunomia data files and load into a database
+Extract files from a .ZIP file and creates a OMOP CDM database that is then stored in the
+same directory as the .ZIP file. — extractLoadData • Eunomia</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/cosmo/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Extract the Eunomia data files and load into a database
+Extract files from a .ZIP file and creates a OMOP CDM database that is then stored in the
+same directory as the .ZIP file. — extractLoadData"><meta property="og:description" content="Extract the Eunomia data files and load into a database
+Extract files from a .ZIP file and creates a OMOP CDM database that is then stored in the
 same directory as the .ZIP file."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
 <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
 <script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
@@ -23,7 +23,7 @@
       </button>
       <span class="navbar-brand">
         <a class="navbar-link" href="../index.html">Eunomia</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">2.0</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">2.0.0</span>
       </span>
     </div>
 
@@ -35,7 +35,7 @@
   <a href="../news/index.html">Changelog</a>
 </li>
       </ul><ul class="nav navbar-nav navbar-right"><li>
-  <a href="https://ohdsi.github.io/Hades" class="external-link"><img src='https://ohdsi.github.io/Hades/images/hadesMini.png' width=80 height=17 style='vertical-align: top;'></a>
+  <a href="https://ohdsi.github.io/Hades" class="external-link">hadesLogo</a>
 </li>
 <li>
   <a href="https://github.com/OHDSI/Eunomia/" class="external-link">
@@ -52,27 +52,54 @@
       </header><div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
-    <h1>Extract the Eunomia data files and load into a SQLite database
-Extract files from a .ZIP file and creates a SQLite OMOP CDM database that is then stored in the
+    <h1>Extract the Eunomia data files and load into a database
+Extract files from a .ZIP file and creates a OMOP CDM database that is then stored in the
 same directory as the .ZIP file.</h1>
     <small class="dont-index">Source: <a href="https://github.com/OHDSI/Eunomia/blob/HEAD/R/EunomiaData.R" class="external-link"><code>R/EunomiaData.R</code></a></small>
     <div class="hidden name"><code>extractLoadData.Rd</code></div>
     </div>
 
     <div class="ref-description">
-    <p>Extract the Eunomia data files and load into a SQLite database
-Extract files from a .ZIP file and creates a SQLite OMOP CDM database that is then stored in the
+    <p>Extract the Eunomia data files and load into a database
+Extract files from a .ZIP file and creates a OMOP CDM database that is then stored in the
 same directory as the .ZIP file.</p>
     </div>
 
     <div id="ref-usage">
-    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">extractLoadData</span><span class="op">(</span><span class="va">dataFilePath</span><span class="op">)</span></span></code></pre></div>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">extractLoadData</span><span class="op">(</span></span>
+<span>  <span class="va">from</span>,</span>
+<span>  <span class="va">to</span>,</span>
+<span>  dbms <span class="op">=</span> <span class="st">"sqlite"</span>,</span>
+<span>  cdmVersion <span class="op">=</span> <span class="st">"5.3"</span>,</span>
+<span>  inputFormat <span class="op">=</span> <span class="st">"csv"</span>,</span>
+<span>  verbose <span class="op">=</span> <span class="cn">FALSE</span></span>
+<span><span class="op">)</span></span></code></pre></div>
     </div>
 
     <div id="arguments">
     <h2>Arguments</h2>
-    <dl><dt>dataFilePath</dt>
-<dd><p>The path to the .ZIP file that contains the data</p></dd>
+    <dl><dt>from</dt>
+<dd><p>The path to the .ZIP file that contains the csv CDM source files</p></dd>
+
+
+<dt>to</dt>
+<dd><p>The path to the .sqlite or .duckdb file that will be created</p></dd>
+
+
+<dt>dbms</dt>
+<dd><p>The file based database system to use: 'sqlite' (default) or 'duckdb'</p></dd>
+
+
+<dt>cdmVersion</dt>
+<dd><p>The version of the OMOP CDM that are represented in the archive files.</p></dd>
+
+
+<dt>inputFormat</dt>
+<dd><p>The format of the files expected in the archive. (csv or parquet)</p></dd>
+
+
+<dt>verbose</dt>
+<dd><p>Provide additional logging details during execution.</p></dd>
 
 </dl></div>
     <div id="see-also">
@@ -94,11 +121,11 @@ <h2>Examples</h2>
 
 
       <footer><div class="copyright">
-  <p></p><p>Developed by Frank DeFalco, Martijn Schuemie, Anthony Sena, Natthawut Adulyanukosol, Star Liu.</p>
+  <p></p><p>Developed by Frank DeFalco, Martijn Schuemie, Anthony Sena, Natthawut Adulyanukosol, Star Liu, Adam Black.</p>
 </div>
 
 <div class="pkgdown">
-  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.6.</p>
+  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
 </div>
 
       </footer></div>
diff --git a/docs/reference/getDatabaseFile.html b/docs/reference/getDatabaseFile.html
new file mode 100644
index 0000000..e653239
--- /dev/null
+++ b/docs/reference/getDatabaseFile.html
@@ -0,0 +1,158 @@
+<!DOCTYPE html>
+<!-- Generated by pkgdown: do not edit by hand --><html lang="en"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8"><meta charset="utf-8"><meta http-equiv="X-UA-Compatible" content="IE=edge"><meta name="viewport" content="width=device-width, initial-scale=1.0"><title>Create a copy of a Eunomia dataset — getDatabaseFile • Eunomia</title><!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/cosmo/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous"><script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="../bootstrap-toc.css"><script src="../bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous"><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous"><!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="../pkgdown.css" rel="stylesheet"><script src="../pkgdown.js"></script><meta property="og:title" content="Create a copy of a Eunomia dataset — getDatabaseFile"><meta property="og:description" content="Creates a copy of a Eunomia database, and returns the path to the new database file.
+If the dataset does not yet exist on the user's computer it will attempt to download the source data
+to the the path defined by the EUNOMIA_DATA_FOLDER environment variable."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
+<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
+<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
+<![endif]--></head><body data-spy="scroll" data-target="#toc">
+    
+
+    <div class="container template-reference-topic">
+      <header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
+  <div class="container">
+    <div class="navbar-header">
+      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
+        <span class="sr-only">Toggle navigation</span>
+        <span class="icon-bar"></span>
+        <span class="icon-bar"></span>
+        <span class="icon-bar"></span>
+      </button>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">Eunomia</a>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="">2.0.0</span>
+      </span>
+    </div>
+
+    <div id="navbar" class="navbar-collapse collapse">
+      <ul class="nav navbar-nav"><li>
+  <a href="../reference/index.html">Reference</a>
+</li>
+<li>
+  <a href="../news/index.html">Changelog</a>
+</li>
+      </ul><ul class="nav navbar-nav navbar-right"><li>
+  <a href="https://ohdsi.github.io/Hades" class="external-link">hadesLogo</a>
+</li>
+<li>
+  <a href="https://github.com/OHDSI/Eunomia/" class="external-link">
+    <span class="fab fa-github fa-lg"></span>
+     
+  </a>
+</li>
+      </ul></div><!--/.nav-collapse -->
+  </div><!--/.container -->
+</div><!--/.navbar -->
+
+      
+
+      </header><div class="row">
+  <div class="col-md-9 contents">
+    <div class="page-header">
+    <h1>Create a copy of a Eunomia dataset</h1>
+    <small class="dont-index">Source: <a href="https://github.com/OHDSI/Eunomia/blob/HEAD/R/Connection.R" class="external-link"><code>R/Connection.R</code></a></small>
+    <div class="hidden name"><code>getDatabaseFile.Rd</code></div>
+    </div>
+
+    <div class="ref-description">
+    <p>Creates a copy of a Eunomia database, and returns the path to the new database file.
+If the dataset does not yet exist on the user's computer it will attempt to download the source data
+to the the path defined by the EUNOMIA_DATA_FOLDER environment variable.</p>
+    </div>
+
+    <div id="ref-usage">
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">getDatabaseFile</span><span class="op">(</span></span>
+<span>  <span class="va">datasetName</span>,</span>
+<span>  cdmVersion <span class="op">=</span> <span class="st">"5.3"</span>,</span>
+<span>  pathToData <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/Sys.getenv.html" class="external-link">Sys.getenv</a></span><span class="op">(</span><span class="st">"EUNOMIA_DATA_FOLDER"</span><span class="op">)</span>,</span>
+<span>  dbms <span class="op">=</span> <span class="st">"sqlite"</span>,</span>
+<span>  databaseFile <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/tempfile.html" class="external-link">tempfile</a></span><span class="op">(</span>fileext <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste0</a></span><span class="op">(</span><span class="st">"."</span>, <span class="va">dbms</span><span class="op">)</span><span class="op">)</span>,</span>
+<span>  inputFormat <span class="op">=</span> <span class="st">"csv"</span>,</span>
+<span>  verbose <span class="op">=</span> <span class="cn">FALSE</span>,</span>
+<span>  overwrite <span class="op">=</span> <span class="cn">TRUE</span></span>
+<span><span class="op">)</span></span></code></pre></div>
+    </div>
+
+    <div id="arguments">
+    <h2>Arguments</h2>
+    <dl><dt>datasetName</dt>
+<dd><p>The data set name as found on https://github.com/OHDSI/EunomiaDatasets. The
+data set name corresponds to the folder with the data set ZIP files</p></dd>
+
+
+<dt>cdmVersion</dt>
+<dd><p>The OMOP CDM version. This version will appear in the suffix of the data file,
+for example: &lt;datasetName&gt;_&lt;cdmVersion&gt;.zip. Default: '5.3'</p></dd>
+
+
+<dt>pathToData</dt>
+<dd><p>The path where the Eunomia data is stored on the file system., By default the
+value of the environment variable "EUNOMIA_DATA_FOLDER" is used.</p></dd>
+
+
+<dt>dbms</dt>
+<dd><p>The database system to use. "sqlite" (default) or "duckdb"</p></dd>
+
+
+<dt>databaseFile</dt>
+<dd><p>The path where the database file will be copied to. By default, the database
+will be copied to a temporary folder, and will be deleted at the end of the R
+session.</p></dd>
+
+
+<dt>inputFormat</dt>
+<dd><p>The format of the files expected in the archive. (csv or parquet)</p></dd>
+
+
+<dt>verbose</dt>
+<dd><p>Provide additional logging details during execution</p></dd>
+
+
+<dt>overwrite</dt>
+<dd><p>Remove and replace an existing data set.</p></dd>
+
+</dl></div>
+    <div id="value">
+    <h2>Value</h2>
+    
+
+<p>The file path to the new Eunomia dataset copy</p>
+    </div>
+
+    <div id="ref-examples">
+    <h2>Examples</h2>
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="op">{</span></span>
+<span> <span class="va">conn</span> <span class="op">&lt;-</span> <span class="fu">DBI</span><span class="fu">::</span><span class="fu"><a href="https://dbi.r-dbi.org/reference/dbConnect.html" class="external-link">dbConnect</a></span><span class="op">(</span><span class="fu">RSQLite</span><span class="fu">::</span><span class="fu"><a href="https://rsqlite.r-dbi.org/reference/SQLite.html" class="external-link">SQLite</a></span><span class="op">(</span><span class="op">)</span>, <span class="fu">getDatabaseFile</span><span class="op">(</span><span class="st">"GiBleed"</span><span class="op">)</span><span class="op">)</span></span>
+<span> <span class="fu">DBI</span><span class="fu">::</span><span class="fu"><a href="https://dbi.r-dbi.org/reference/dbDisconnect.html" class="external-link">dbDisconnect</a></span><span class="op">(</span><span class="va">conn</span><span class="op">)</span></span>
+<span></span>
+<span> <span class="va">conn</span> <span class="op">&lt;-</span> <span class="fu">DBI</span><span class="fu">::</span><span class="fu"><a href="https://dbi.r-dbi.org/reference/dbConnect.html" class="external-link">dbConnect</a></span><span class="op">(</span><span class="fu">duckdb</span><span class="fu">::</span><span class="fu"><a href="https://rdrr.io/pkg/duckdb/man/duckdb.html" class="external-link">duckdb</a></span><span class="op">(</span><span class="op">)</span>, <span class="fu">getDatabaseFile</span><span class="op">(</span><span class="st">"GiBleed"</span>, dbms <span class="op">=</span> <span class="st">"duckdb"</span><span class="op">)</span><span class="op">)</span></span>
+<span> <span class="fu">DBI</span><span class="fu">::</span><span class="fu"><a href="https://dbi.r-dbi.org/reference/dbDisconnect.html" class="external-link">dbDisconnect</a></span><span class="op">(</span><span class="va">conn</span>, shutdown <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
+<span></span>
+<span> <span class="va">conn</span> <span class="op">&lt;-</span> <span class="fu">DatabaseConnector</span><span class="fu">::</span><span class="fu"><a href="https://ohdsi.github.io/DatabaseConnector/reference/connect.html" class="external-link">connect</a></span><span class="op">(</span>dbms <span class="op">=</span> <span class="st">"sqlite"</span>, server <span class="op">=</span> <span class="fu">getDatabaseFile</span><span class="op">(</span><span class="st">"GiBleed"</span><span class="op">)</span><span class="op">)</span></span>
+<span> <span class="fu">DatabaseConnector</span><span class="fu">::</span><span class="fu"><a href="https://ohdsi.github.io/DatabaseConnector/reference/disconnect.html" class="external-link">disconnect</a></span><span class="op">(</span><span class="va">conn</span><span class="op">)</span></span>
+<span><span class="op">}</span></span>
+<span></span></code></pre></div>
+    </div>
+  </div>
+  <div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
+    <nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2>
+    </nav></div>
+</div>
+
+
+      <footer><div class="copyright">
+  <p></p><p>Developed by Frank DeFalco, Martijn Schuemie, Anthony Sena, Natthawut Adulyanukosol, Star Liu, Adam Black.</p>
+</div>
+
+<div class="pkgdown">
+  <p></p><p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 2.0.7.</p>
+</div>
+
+      </footer></div>
+
+  
+
+
+  
+
+  </body></html>
+
diff --git a/docs/reference/loadDataFiles.html b/docs/reference/loadDataFiles.html
new file mode 100644
index 0000000..32d872b
--- /dev/null
+++ b/docs/reference/loadDataFiles.html
@@ -0,0 +1,129 @@
+<!DOCTYPE html>
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+  <div class="col-md-9 contents">
+    <div class="page-header">
+    <h1>Load data files into a database(sqlite or duckdb)</h1>
+    <small class="dont-index">Source: <a href="https://github.com/OHDSI/Eunomia/blob/HEAD/R/EunomiaData.R" class="external-link"><code>R/EunomiaData.R</code></a></small>
+    <div class="hidden name"><code>loadDataFiles.Rd</code></div>
+    </div>
+
+    <div class="ref-description">
+    <p>Load data from csv or parquet files into a database file (sqlite or duckdb).</p>
+    </div>
+
+    <div id="ref-usage">
+    <div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">loadDataFiles</span><span class="op">(</span></span>
+<span>  <span class="va">dataPath</span>,</span>
+<span>  <span class="va">dbPath</span>,</span>
+<span>  inputFormat <span class="op">=</span> <span class="st">"csv"</span>,</span>
+<span>  cdmVersion <span class="op">=</span> <span class="st">"5.3"</span>,</span>
+<span>  cdmDatabaseSchema <span class="op">=</span> <span class="st">"main"</span>,</span>
+<span>  dbms <span class="op">=</span> <span class="st">"sqlite"</span>,</span>
+<span>  verbose <span class="op">=</span> <span class="cn">FALSE</span>,</span>
+<span>  overwrite <span class="op">=</span> <span class="cn">FALSE</span></span>
+<span><span class="op">)</span></span></code></pre></div>
+    </div>
+
+    <div id="arguments">
+    <h2>Arguments</h2>
+    <dl><dt>dataPath</dt>
+<dd><p>The path to the directory containing CDM source files (csv or parquet)</p></dd>
+
+
+<dt>dbPath</dt>
+<dd><p>The path to the .sqlite or .duckdb file that will be created</p></dd>
+
+
+<dt>inputFormat</dt>
+<dd><p>The input format of the files to load.  Supported formats include csv, parquet.</p></dd>
+
+
+<dt>cdmVersion</dt>
+<dd><p>The CDM version to create in the resulting database. Supported versions are 5.3 and 5.4</p></dd>
+
+
+<dt>cdmDatabaseSchema</dt>
+<dd><p>The schema in which to create the CDM tables. Default is main.</p></dd>
+
+
+<dt>dbms</dt>
+<dd><p>The file-based database system to use: 'sqlite' (default) or 'duckdb'</p></dd>
+
+
+<dt>verbose</dt>
+<dd><p>Provide additional logging details during execution.</p></dd>
+
+
+<dt>overwrite</dt>
+<dd><p>Remove and replace an existing data set.</p></dd>
+
+</dl></div>
+
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+  <p></p><p>Developed by Frank DeFalco, Martijn Schuemie, Anthony Sena, Natthawut Adulyanukosol, Star Liu, Adam Black.</p>
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