diff --git a/.github/workflows/update-jsonld.yml b/.github/workflows/update-jsonld.yml index e46340133..970ec8879 100644 --- a/.github/workflows/update-jsonld.yml +++ b/.github/workflows/update-jsonld.yml @@ -21,7 +21,9 @@ jobs: - name: Get a list of directories with updated files id: updated-dirs - uses: WCRP-CMIP/CMIP-LD/actions/updated_dirs@main + uses: WCRP-CMIP/CMIP-LD/actions/updated-dirs@main + with: + filter_dir: "JSONLD" - name: Compile JSONLD files, generate an RDF network and update frames id: jsonld @@ -30,4 +32,20 @@ jobs: dirs: ${{ env.updated_dirs }} frames: "$PWD/compiled/graph_data.json" - \ No newline at end of file + - name: Run Update Scripts + if: ${{ env.updated_dirs }} + id: run-all-files + uses: WCRP-CMIP/CMIP-LD/actions/run-all-files@main + with: + directory: "$PWD/JSONLD/scripts" + script: python + script_ext: .py + + - name: Commit All + uses: WCRP-CMIP/CMIP-LD/actions/commit-all@main + with: + message: "Automated Content Update" + + - name: Push Changes + run: | + git push \ No newline at end of file diff --git a/JSONLD/archive/showcase /combine_ld.py b/JSONLD/archive/showcase /combine_ld.py deleted file mode 100644 index a6b920283..000000000 --- a/JSONLD/archive/showcase /combine_ld.py +++ /dev/null @@ -1,59 +0,0 @@ -import asyncio -import glob -import os -import json -from pprint import pprint -from tqdm import tqdm - -async def read_json_file(file_path): - with open(file_path, mode='r') as f: - content = f.read() - return json.loads(content) - -async def read_json_files(file_paths): - tasks = [read_json_file(file_path) for file_path in file_paths] - return await asyncio.gather(*tasks) - -async def categorize_files(directory): - graph_files = [] - context_files = [] - - for root, dirs, files in os.walk(directory): - - if 'context.json' in files: - - context_file_path = os.path.join(root, 'context.json') - context_files.append(context_file_path) - - # Also add all JSON files in this directory to graph_files - graph_files.extend(os.path.join(root, file) for file in files if file.endswith('.json') and not file.endswith('context.json')) - - graph_data = await read_json_files(graph_files) - - - context_data = {} - - # Loop through each entry in the contexts list - for entry in await read_json_files(context_files): - # Loop through each key-value pair in the entry dictionary - for key, value in entry.items(): - if key in context_data: - context_data[key]['@context'].update(value['@context']) - else: - context_data[key] = value - - - context_data = context_data - - return {'graph': graph_data, 'context': context_data} - -async def main(): - lddata = await categorize_files('./') - - # Dumping the contents of each category to separate files - json.dump(lddata['graph'], open('graph_data.json', 'w'), indent=4) - json.dump(lddata['context'], open('context_data.json', 'w'), indent=4) - -# Create a new event loop and run the main coroutine until it completes -loop = asyncio.get_event_loop() -loop.run_until_complete(main()) diff --git a/JSONLD/archive/showcase /context_data.json b/JSONLD/archive/showcase /context_data.json deleted file mode 100644 index 23902edf1..000000000 --- a/JSONLD/archive/showcase /context_data.json +++ /dev/null @@ -1,19 +0,0 @@ -{ - "consortia": { - "@context": { - "@base": "https://github.com/PCMDI/mip-cmor-tables/tree/json-ld/JSONLD/consortia", - "@vocab": "consortia" - } - }, - "institutions": { - "@context": { - "@base": "https://github.com/PCMDI/mip-cmor-tables/tree/json-ld/JSONLD/institutions", - "@vocab": "institutions" - } - }, - "location": { - "@context": { - "@vocab": "location:" - } - } -} diff --git a/JSONLD/archive/showcase /developement/prepare_institutions.ipynb b/JSONLD/archive/showcase /developement/prepare_institutions.ipynb deleted file mode 100644 index dafc78ff6..000000000 --- a/JSONLD/archive/showcase /developement/prepare_institutions.ipynb +++ /dev/null @@ -1,1180 +0,0 @@ -{ - "cells": [ - { - "cell_type": "code", - "execution_count": 1, - "metadata": {}, - "outputs": [], - "source": [ - "import json, pyld\n", - "from pyld import jsonld" - ] - }, - { - "cell_type": "code", - "execution_count": 45, - "metadata": {}, - "outputs": [], - "source": [ - "institutions = json.load(open('../../MIP_institutions.json'))\n", - "consortiums = json.load(open('../../MIP_consortiums.json'))" - ] - }, - { - "cell_type": "code", - "execution_count": 4, - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "{'institutions': {'AER': {'identifiers': {'institution_name': 'Atmospheric and Environmental Research',\n", - " 'aliases': [],\n", - " 'acronyms': ['AER'],\n", - " 'labels': [],\n", - " 'ror': '04cg70g73',\n", - " 'url': ['http://www.aer.com/'],\n", - " 'established': 1977,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 42.539472,\n", - " 'lon': -71.256946,\n", - " 'city': 'Lexington',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'AS-RCEC': {'identifiers': {'institution_name': 'Research Center for Environmental Changes, Academia Sinica',\n", - " 'aliases': [],\n", - " 'acronyms': ['RCEC'],\n", - " 'labels': [],\n", - " 'ror': '050qpg053',\n", - " 'url': ['http://www.rcec.sinica.edu.tw/'],\n", - " 'established': None,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 25.040712,\n", - " 'lon': 121.614171,\n", - " 'city': 'Taipei',\n", - " 'country': ['Taiwan', 'TW']},\n", - " 'consortiums': []},\n", - " 'AWI': {'identifiers': {'institution_name': 'Alfred Wegener Institute for Polar and Marine Research',\n", - " 'aliases': [],\n", - " 'acronyms': ['AWI'],\n", - " 'labels': [],\n", - " 'ror': '032e6b942',\n", - " 'url': ['https://www.awi.de'],\n", - " 'established': 1980,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 53.53615,\n", - " 'lon': 8.59298,\n", - " 'city': 'Bremerhaven',\n", - " 'country': ['Germany', 'DE']},\n", - " 'consortiums': []},\n", - " 'BCC': {'identifiers': {'institution_name': 'Beijing Biocytogen (China)',\n", - " 'aliases': [],\n", - " 'acronyms': [],\n", - " 'labels': [],\n", - " 'ror': '01spyyb53',\n", - " 'url': ['http://www.bbctg.com.cn/'],\n", - " 'established': 2008,\n", - " 'type': 'Company'},\n", - " 'location': {'lat': 39.950128,\n", - " 'lon': 116.383679,\n", - " 'city': 'Beijing',\n", - " 'country': ['China', 'CN']},\n", - " 'consortiums': []},\n", - " 'CAMS': {'identifiers': {'institution_name': 'Chinese Academy of Meteorological Sciences',\n", - " 'aliases': [],\n", - " 'acronyms': ['CAMS'],\n", - " 'labels': [],\n", - " 'ror': '034b53w38',\n", - " 'url': ['http://www.camscma.cn/en.html'],\n", - " 'established': 1978,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 39.9075,\n", - " 'lon': 116.39723,\n", - " 'city': 'Beijing',\n", - " 'country': ['China', 'CN']},\n", - " 'consortiums': []},\n", - " 'CAS': {'identifiers': {'institution_name': 'Chinese Academy of Sciences',\n", - " 'aliases': [],\n", - " 'acronyms': ['CAS'],\n", - " 'labels': [],\n", - " 'ror': '034t30j35',\n", - " 'url': ['http://english.cas.cn/'],\n", - " 'established': 1949,\n", - " 'type': 'Government'},\n", - " 'location': {'lat': 39.9075,\n", - " 'lon': 116.39723,\n", - " 'city': 'Beijing',\n", - " 'country': ['China', 'CN']},\n", - " 'consortiums': []},\n", - " 'CCCR-IITM': {'identifiers': {'institution_name': 'Indian Institute of Tropical Meteorology',\n", - " 'aliases': [],\n", - " 'acronyms': ['IITM'],\n", - " 'labels': [],\n", - " 'ror': '03jf2m686',\n", - " 'url': ['http://www.tropmet.res.in/'],\n", - " 'established': 1962,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 18.51957,\n", - " 'lon': 73.85535,\n", - " 'city': 'Pune',\n", - " 'country': ['India', 'IN']},\n", - " 'consortiums': []},\n", - " 'CCCma': {'identifiers': {'institution_name': 'Environment and Climate Change Canada',\n", - " 'aliases': [],\n", - " 'acronyms': ['ECCC'],\n", - " 'labels': [],\n", - " 'ror': '026ny0e17',\n", - " 'url': ['https://www.canada.ca/en/environment-climate-change.html'],\n", - " 'established': 1971,\n", - " 'type': 'Government'},\n", - " 'location': {'lat': 45.425373,\n", - " 'lon': -75.699862,\n", - " 'city': 'Gatineau',\n", - " 'country': ['Canada', 'CA']},\n", - " 'consortiums': []},\n", - " 'CEDA': {'identifiers': {'institution_name': 'Centre for Environmental Data Analysis',\n", - " 'aliases': [],\n", - " 'acronyms': ['CEDA'],\n", - " 'labels': [],\n", - " 'ror': '04j4kad11',\n", - " 'url': ['https://www.ceda.ac.uk/'],\n", - " 'established': 2005,\n", - " 'type': 'Government'},\n", - " 'location': {'lat': 53.41667,\n", - " 'lon': -0.96667,\n", - " 'city': 'Harwell',\n", - " 'country': ['United Kingdom', 'GB']},\n", - " 'consortiums': []},\n", - " 'CMCC': {'identifiers': {'institution_name': 'Euro-Mediterranean Center for Climate Change',\n", - " 'aliases': [],\n", - " 'acronyms': ['CMCC'],\n", - " 'labels': [],\n", - " 'ror': '01tf11a61',\n", - " 'url': ['http://www.cmcc.it/'],\n", - " 'established': 2005,\n", - " 'type': 'Nonprofit'},\n", - " 'location': {'lat': 40.33942,\n", - " 'lon': 18.086602,\n", - " 'city': 'Lecce',\n", - " 'country': ['Italy', 'IT']},\n", - " 'consortiums': []},\n", - " 'CNES': {'identifiers': {'institution_name': \"Centre National d'Études Spatiales\",\n", - " 'aliases': [],\n", - " 'acronyms': ['CNES'],\n", - " 'labels': [],\n", - " 'ror': '04h1h0y33',\n", - " 'url': ['https://www.cnes.fr'],\n", - " 'established': 1961,\n", - " 'type': 'Government'},\n", - " 'location': {'lat': 48.85341,\n", - " 'lon': 2.3488,\n", - " 'city': 'Paris',\n", - " 'country': ['France', 'FR']},\n", - " 'consortiums': []},\n", - " 'CSIRO': {'identifiers': {'institution_name': 'Commonwealth Scientific and Industrial Research Organisation',\n", - " 'aliases': [],\n", - " 'acronyms': ['CSIRO'],\n", - " 'labels': [],\n", - " 'ror': '03qn8fb07',\n", - " 'url': ['http://www.csiro.au/'],\n", - " 'established': 1926,\n", - " 'type': 'Government'},\n", - " 'location': {'lat': -35.28346,\n", - " 'lon': 149.12807,\n", - " 'city': 'Canberra',\n", - " 'country': ['Australia', 'AU']},\n", - " 'consortiums': []},\n", - " 'DKRZ': {'identifiers': {'institution_name': 'German Climate Computing Centre',\n", - " 'aliases': [],\n", - " 'acronyms': ['DKRZ'],\n", - " 'labels': [],\n", - " 'ror': '03ztgj037',\n", - " 'url': ['https://www.dkrz.de/'],\n", - " 'established': 1987,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 53.55073,\n", - " 'lon': 9.99302,\n", - " 'city': 'Hamburg',\n", - " 'country': ['Germany', 'DE']},\n", - " 'consortiums': []},\n", - " 'DWD': {'identifiers': {'institution_name': 'German Meteorological Service',\n", - " 'aliases': [],\n", - " 'acronyms': ['DWD'],\n", - " 'labels': [],\n", - " 'ror': '02nrqs528',\n", - " 'url': ['http://www.dwd.de/'],\n", - " 'established': 1952,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 50.103322,\n", - " 'lon': 8.747606,\n", - " 'city': 'Offenbach',\n", - " 'country': ['Germany', 'DE']},\n", - " 'consortiums': []},\n", - " 'ECMWF': {'identifiers': {'institution_name': 'European Centre for Medium-Range Weather Forecasts',\n", - " 'aliases': [],\n", - " 'acronyms': ['ECMWF'],\n", - " 'labels': [],\n", - " 'ror': '014w0fd65',\n", - " 'url': ['http://www.ecmwf.int/'],\n", - " 'established': 1975,\n", - " 'type': 'Other'},\n", - " 'location': {'lat': 51.45625,\n", - " 'lon': -0.97113,\n", - " 'city': 'Reading',\n", - " 'country': ['United Kingdom', 'GB']},\n", - " 'consortiums': []},\n", - " 'ESSO': {'identifiers': {'institution_name': 'Indian National Centre for Ocean Information Services',\n", - " 'aliases': [],\n", - " 'acronyms': ['INCOIS'],\n", - " 'labels': [],\n", - " 'ror': '04xbqmj23',\n", - " 'url': ['http://www.incois.gov.in/portal/index.jsp'],\n", - " 'established': 1999,\n", - " 'type': 'Government'},\n", - " 'location': {'lat': 17.528234,\n", - " 'lon': 78.400195,\n", - " 'city': 'Hyderabad',\n", - " 'country': ['India', 'IN']},\n", - " 'consortiums': []},\n", - " 'IACETH': {'identifiers': {'institution_name': 'ETH Zurich',\n", - " 'aliases': ['Swiss Federal Institute of Technology in Zurich',\n", - " 'Eidgenössische Technische Hochschule Zürich',\n", - " 'École Polytechnique Fédérale de Zurich',\n", - " 'Politecnico Federale di Zurigo'],\n", - " 'acronyms': [],\n", - " 'labels': [],\n", - " 'ror': '05a28rw58',\n", - " 'url': ['https://ethz.ch'],\n", - " 'established': 1855,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 47.36667,\n", - " 'lon': 8.55,\n", - " 'city': 'Zurich',\n", - " 'country': ['Switzerland', 'CH']},\n", - " 'consortiums': []},\n", - " 'INM': {'identifiers': {'institution_name': 'Institute of Numerical Mathematics',\n", - " 'aliases': [],\n", - " 'acronyms': ['INM RAS'],\n", - " 'labels': [],\n", - " 'ror': '00520ey40',\n", - " 'url': ['http://www.inm.ras.ru/inm_en_ver/index.htm'],\n", - " 'established': 1980,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 55.762997,\n", - " 'lon': 37.625605,\n", - " 'city': 'Moscow',\n", - " 'country': ['Russia', 'RU']},\n", - " 'consortiums': []},\n", - " 'IPSL': {'identifiers': {'institution_name': 'Institut Pierre-Simon Laplace',\n", - " 'aliases': [],\n", - " 'acronyms': ['IPSL'],\n", - " 'labels': [],\n", - " 'ror': '02haar591',\n", - " 'url': ['https://www.ipsl.fr/en/'],\n", - " 'established': 1991,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 48.855675,\n", - " 'lon': 2.332105,\n", - " 'city': 'Paris',\n", - " 'country': ['France', 'FR']},\n", - " 'consortiums': []},\n", - " 'ImperialCollege': {'identifiers': {'institution_name': 'Imperial College London',\n", - " 'aliases': [],\n", - " 'acronyms': [],\n", - " 'labels': [],\n", - " 'ror': '041kmwe10',\n", - " 'url': ['http://www.imperial.ac.uk/'],\n", - " 'established': 1907,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 51.4986,\n", - " 'lon': -0.175478,\n", - " 'city': 'London',\n", - " 'country': ['United Kingdom', 'GB']},\n", - " 'consortiums': []},\n", - " 'JAXA': {'identifiers': {'institution_name': 'Japan Aerospace Exploration Agency',\n", - " 'aliases': ['Dokuritsu-gyōsei-hōjin Uchū Kōkū Kenkyū Kaihatsu Kikō',\n", - " 'Independent Administrative Institution on Aerospace Research and Development'],\n", - " 'acronyms': ['JAXA'],\n", - " 'labels': [],\n", - " 'ror': '059yhyy33',\n", - " 'url': ['http://global.jaxa.jp/'],\n", - " 'established': 2003,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 35.680834,\n", - " 'lon': 139.558269,\n", - " 'city': 'Tokyo',\n", - " 'country': ['Japan', 'JP']},\n", - " 'consortiums': []},\n", - " 'KIOST': {'identifiers': {'institution_name': 'Korea Institute of Ocean Science and Technology',\n", - " 'aliases': ['Korean Ocean Research and Development Institute'],\n", - " 'acronyms': ['KIOST'],\n", - " 'labels': [],\n", - " 'ror': '032m55064',\n", - " 'url': ['http://eng.kiost.ac/'],\n", - " 'established': 1973,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 35.10168,\n", - " 'lon': 129.03004,\n", - " 'city': 'Busan',\n", - " 'country': ['South Korea', 'KR']},\n", - " 'consortiums': []},\n", - " 'LLNL': {'identifiers': {'institution_name': 'Lawrence Livermore National Laboratory',\n", - " 'aliases': ['United States Department of Energy National Nuclear Security Administration Lawrence Livermore National Laboratory',\n", - " 'U.S. Department of Energy National Nuclear Security Administration Los Alamos National Laboratory',\n", - " 'United States Department of Energy Los Alamos National Laboratory',\n", - " 'U.S. Department of Energy Los Alamos National Laboratory'],\n", - " 'acronyms': ['LLNL', 'LLL'],\n", - " 'labels': [],\n", - " 'ror': '041nk4h53',\n", - " 'url': ['https://www.llnl.gov/'],\n", - " 'established': 1952,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 37.68187,\n", - " 'lon': -121.76801,\n", - " 'city': 'Livermore',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'MOHC': {'identifiers': {'institution_name': 'Met Office Hadley Centre',\n", - " 'aliases': [],\n", - " 'acronyms': [],\n", - " 'labels': [],\n", - " 'ror': '',\n", - " 'url': ['https://www.metoffice.gov.uk/weather/climate/met-office-hadley-centre/index/'],\n", - " 'established': 1990,\n", - " 'type': 'Government'},\n", - " 'location': {'lat': 50.7236,\n", - " 'lon': -3.52751,\n", - " 'city': 'Exeter',\n", - " 'country': ['United Kingdom', 'GB']},\n", - " 'consortiums': []},\n", - " 'MPI-B': {'identifiers': {'institution_name': 'Max Planck Institute for Biogeochemistry',\n", - " 'aliases': [],\n", - " 'acronyms': [],\n", - " 'labels': [],\n", - " 'ror': '051yxp643',\n", - " 'url': ['http://www.bgc-jena.mpg.de/'],\n", - " 'established': 1997,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 50.910556,\n", - " 'lon': 11.567222,\n", - " 'city': 'Jena',\n", - " 'country': ['Germany', 'DE']},\n", - " 'consortiums': []},\n", - " 'MPI-M': {'identifiers': {'institution_name': 'Max Planck Institute for Meteorology',\n", - " 'aliases': [],\n", - " 'acronyms': ['MPI-M'],\n", - " 'labels': [],\n", - " 'ror': '05esem239',\n", - " 'url': ['http://www.mpimet.mpg.de/en/home.html'],\n", - " 'established': 1975,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 53.567794,\n", - " 'lon': 9.975468,\n", - " 'city': 'Hamburg',\n", - " 'country': ['Germany', 'DE']},\n", - " 'consortiums': []},\n", - " 'MRI': {'identifiers': {'institution_name': 'Japan Meteorological Agency',\n", - " 'aliases': ['Kishō-chō'],\n", - " 'acronyms': ['JMA'],\n", - " 'labels': [],\n", - " 'ror': '02772kk97',\n", - " 'url': ['http://www.jma.go.jp/jma/indexe.html'],\n", - " 'established': 1956,\n", - " 'type': 'Other'},\n", - " 'location': {'lat': 35.6895,\n", - " 'lon': 139.69171,\n", - " 'city': 'Tokyo',\n", - " 'country': ['Japan', 'JP']},\n", - " 'consortiums': []},\n", - " 'NASA-GISS': {'identifiers': {'institution_name': 'Goddard Institute for Space Studies',\n", - " 'aliases': [],\n", - " 'acronyms': ['GISS'],\n", - " 'labels': [],\n", - " 'ror': '01cyfxe35',\n", - " 'url': ['http://www.giss.nasa.gov/'],\n", - " 'established': 1961,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 40.71427,\n", - " 'lon': -74.00597,\n", - " 'city': 'New York',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'NASA-GSFC': {'identifiers': {'institution_name': 'Goddard Space Flight Center',\n", - " 'aliases': [],\n", - " 'acronyms': ['GSFC'],\n", - " 'labels': [],\n", - " 'ror': '0171mag52',\n", - " 'url': ['https://www.nasa.gov/centers/goddard/home/index.html'],\n", - " 'established': 1959,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 39.00455,\n", - " 'lon': -76.87553,\n", - " 'city': 'Greenbelt',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'NASA-JPL': {'identifiers': {'institution_name': 'Jet Propulsion Laboratory',\n", - " 'aliases': ['Jet Propulsion Lab',\n", - " 'Jet Propulsion Laboratory, California Institute of Technology'],\n", - " 'acronyms': ['JPL'],\n", - " 'labels': [],\n", - " 'ror': '027k65916',\n", - " 'url': ['http://www.jpl.nasa.gov/'],\n", - " 'established': 1936,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 34.19917,\n", - " 'lon': -118.18785,\n", - " 'city': 'La Cañada Flintridge',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'NASA-LaRC': {'identifiers': {'institution_name': 'Langley Research Center',\n", - " 'aliases': [],\n", - " 'acronyms': ['LaRC'],\n", - " 'labels': [],\n", - " 'ror': '0399mhs52',\n", - " 'url': ['http://www.nasa.gov/langley'],\n", - " 'established': 1917,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 37.02987,\n", - " 'lon': -76.34522,\n", - " 'city': 'Hampton',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'NCAR': {'identifiers': {'institution_name': 'National Center for Atmospheric Research',\n", - " 'aliases': [],\n", - " 'acronyms': ['NCAR'],\n", - " 'labels': [],\n", - " 'ror': '05cvfcr44',\n", - " 'url': ['https://ncar.ucar.edu/'],\n", - " 'established': 1930,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 40.01499,\n", - " 'lon': -105.27055,\n", - " 'city': 'Boulder',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'NCAS': {'identifiers': {'institution_name': 'Uks',\n", - " 'aliases': [],\n", - " 'acronyms': [],\n", - " 'labels': [],\n", - " 'ror': '03q36cn05',\n", - " 'url': ['http://www.uksresearch.com/'],\n", - " 'established': 1997,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 33.72148,\n", - " 'lon': 73.04329,\n", - " 'city': 'Islamabad',\n", - " 'country': ['Pakistan', 'PK']},\n", - " 'consortiums': []},\n", - " 'NERC': {'identifiers': {'institution_name': 'Natural Environment Research Council',\n", - " 'aliases': [],\n", - " 'acronyms': ['NERC'],\n", - " 'labels': [],\n", - " 'ror': '02b5d8509',\n", - " 'url': ['https://www.ukri.org/councils/nerc/'],\n", - " 'established': 1965,\n", - " 'type': 'Government'},\n", - " 'location': {'lat': 51.55797,\n", - " 'lon': -1.78116,\n", - " 'city': 'Swindon',\n", - " 'country': ['United Kingdom', 'GB']},\n", - " 'consortiums': []},\n", - " 'NIWA': {'identifiers': {'institution_name': 'National Institute of Water and Atmospheric Research',\n", - " 'aliases': ['Taihoro Nukurangi'],\n", - " 'acronyms': ['NIWA'],\n", - " 'labels': [],\n", - " 'ror': '04hxcaz34',\n", - " 'url': ['https://www.niwa.co.nz/'],\n", - " 'established': 1992,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': -36.84403,\n", - " 'lon': 174.76172,\n", - " 'city': 'Auckland',\n", - " 'country': ['New Zealand', 'NZ']},\n", - " 'consortiums': []},\n", - " 'NOAA-NCEI': {'identifiers': {'institution_name': 'NOAA National Centers for Environmental Information',\n", - " 'aliases': ['National Climatic Data Center',\n", - " 'United States National Environmental Satellites, Data, and Information Service National Centers for Environmental Information',\n", - " 'United States National Centers for Environmental Information',\n", - " 'U.S. National Centers for Environmental Information',\n", - " 'National Centers for Environmental Information'],\n", - " 'acronyms': ['NCEI', 'NOAA NCEI'],\n", - " 'labels': [],\n", - " 'ror': '04r0wrp59',\n", - " 'url': ['https://www.ncei.noaa.gov'],\n", - " 'established': 1934,\n", - " 'type': 'Government'},\n", - " 'location': {'lat': 35.60095,\n", - " 'lon': -82.55402,\n", - " 'city': 'Asheville',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'NTU': {'identifiers': {'institution_name': 'National Taiwan University',\n", - " 'aliases': [],\n", - " 'acronyms': ['NTU'],\n", - " 'labels': [],\n", - " 'ror': '05bqach95',\n", - " 'url': ['http://www.ntu.edu.tw/english/'],\n", - " 'established': 1928,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 25.016,\n", - " 'lon': 121.536,\n", - " 'city': 'Taipei',\n", - " 'country': ['Taiwan', 'TW']},\n", - " 'consortiums': []},\n", - " 'NUIST': {'identifiers': {'institution_name': 'Nanjing University',\n", - " 'aliases': ['Nanking University'],\n", - " 'acronyms': ['NU', 'NJU '],\n", - " 'labels': [],\n", - " 'ror': '01rxvg760',\n", - " 'url': ['http://www.nju.edu.cn/english/'],\n", - " 'established': 1902,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 32.056111,\n", - " 'lon': 118.775,\n", - " 'city': 'Nanjing',\n", - " 'country': ['China', 'CN']},\n", - " 'consortiums': []},\n", - " 'OSU': {'identifiers': {'institution_name': 'Oregon State University',\n", - " 'aliases': [],\n", - " 'acronyms': ['OSU'],\n", - " 'labels': [],\n", - " 'ror': '00ysfqy60',\n", - " 'url': ['http://oregonstate.edu/'],\n", - " 'established': 1868,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 44.56457,\n", - " 'lon': -123.26204,\n", - " 'city': 'Corvallis',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'PCMDI': {'identifiers': {'institution_name': 'Lawrence Livermore National Laboratory',\n", - " 'aliases': ['United States Department of Energy National Nuclear Security Administration Lawrence Livermore National Laboratory',\n", - " 'U.S. Department of Energy National Nuclear Security Administration Los Alamos National Laboratory',\n", - " 'United States Department of Energy Los Alamos National Laboratory',\n", - " 'U.S. Department of Energy Los Alamos National Laboratory'],\n", - " 'acronyms': ['LLNL', 'LLL'],\n", - " 'labels': [],\n", - " 'ror': '041nk4h53',\n", - " 'url': ['https://www.llnl.gov/'],\n", - " 'established': 1952,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 37.68187,\n", - " 'lon': -121.76801,\n", - " 'city': 'Livermore',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'PNNL-JGCRI': {'identifiers': {'institution_name': 'Joint Global Change Research Institute',\n", - " 'aliases': [],\n", - " 'acronyms': ['JGCRI'],\n", - " 'labels': [],\n", - " 'ror': '058cmd703',\n", - " 'url': ['http://www.globalchange.umd.edu/'],\n", - " 'established': 2001,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 38.971106,\n", - " 'lon': -76.9217851,\n", - " 'city': 'Riverdale Park',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'PNNL-WACCEM': {'identifiers': {'institution_name': 'Pacific Northwest National Laboratory',\n", - " 'aliases': [],\n", - " 'acronyms': ['PNNL'],\n", - " 'labels': [],\n", - " 'ror': '05h992307',\n", - " 'url': ['http://www.pnnl.gov/'],\n", - " 'established': 1965,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 46.28569,\n", - " 'lon': -119.28446,\n", - " 'city': 'Richland',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'RSS': {'identifiers': {'institution_name': 'Remote Sensing Systems (United States)',\n", - " 'aliases': [],\n", - " 'acronyms': ['RSS'],\n", - " 'labels': [],\n", - " 'ror': '01vp8h012',\n", - " 'url': ['http://www.remss.com/'],\n", - " 'established': 1974,\n", - " 'type': 'Company'},\n", - " 'location': {'lat': 38.443733,\n", - " 'lon': -122.717185,\n", - " 'city': 'Santa Rosa',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'SNU': {'identifiers': {'institution_name': 'Seoul National University',\n", - " 'aliases': ['Seoul Daehakgyo'],\n", - " 'acronyms': ['SNU'],\n", - " 'labels': [],\n", - " 'ror': '04h9pn542',\n", - " 'url': ['http://www.snu.ac.kr/index.html'],\n", - " 'established': 1946,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 37.460155,\n", - " 'lon': 126.951894,\n", - " 'city': 'Seoul',\n", - " 'country': ['South Korea', 'KR']},\n", - " 'consortiums': []},\n", - " 'SOLARIS-HEPPA': {'identifiers': {'institution_name': 'GEOMAR Helmholtz Centre for Ocean Research Kiel',\n", - " 'aliases': ['Leibniz Institute of Marine Sciences'],\n", - " 'acronyms': ['IFM-GEOMAR'],\n", - " 'labels': [],\n", - " 'ror': '02h2x0161',\n", - " 'url': ['http://www.geomar.de/en/'],\n", - " 'established': 2004,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 54.327138,\n", - " 'lon': 10.180141,\n", - " 'city': 'Kiel',\n", - " 'country': ['Germany', 'DE']},\n", - " 'consortiums': []},\n", - " 'THU': {'identifiers': {'institution_name': 'Tsinghua University',\n", - " 'aliases': [],\n", - " 'acronyms': ['THU'],\n", - " 'labels': [],\n", - " 'ror': '03cve4549',\n", - " 'url': ['http://www.tsinghua.edu.cn/publish/newthuen/'],\n", - " 'established': 1911,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 39.999585,\n", - " 'lon': 116.325414,\n", - " 'city': 'Beijing',\n", - " 'country': ['China', 'CN']},\n", - " 'consortiums': []},\n", - " 'UA': {'identifiers': {'institution_name': 'University of Arizona',\n", - " 'aliases': [],\n", - " 'acronyms': ['UA'],\n", - " 'labels': [],\n", - " 'ror': '03m2x1q45',\n", - " 'url': ['http://www.arizona.edu/'],\n", - " 'established': 1885,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 32.22174,\n", - " 'lon': -110.92648,\n", - " 'city': 'Tucson',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'UCI': {'identifiers': {'institution_name': 'University of California, Irvine',\n", - " 'aliases': ['UC Irvine'],\n", - " 'acronyms': ['UCI'],\n", - " 'labels': [],\n", - " 'ror': '04gyf1771',\n", - " 'url': ['http://uci.edu/'],\n", - " 'established': 1965,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 33.64535,\n", - " 'lon': -117.842642,\n", - " 'city': 'Irvine',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'UCSB': {'identifiers': {'institution_name': 'University of California, Santa Barbara',\n", - " 'aliases': ['UC Santa Barbara'],\n", - " 'acronyms': ['UCSB'],\n", - " 'labels': [],\n", - " 'ror': '02t274463',\n", - " 'url': ['http://www.ucsb.edu/'],\n", - " 'established': 1891,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 34.42083,\n", - " 'lon': -119.69819,\n", - " 'city': 'Santa Barbara',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'UColorado': {'identifiers': {'institution_name': 'University of Colorado System',\n", - " 'aliases': [],\n", - " 'acronyms': ['CU'],\n", - " 'labels': [],\n", - " 'ror': '00jc20583',\n", - " 'url': ['http://www.cu.edu/'],\n", - " 'established': 1876,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 40.01499,\n", - " 'lon': -105.27055,\n", - " 'city': 'Boulder',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'UHH': {'identifiers': {'institution_name': 'Universität Hamburg',\n", - " 'aliases': ['University of Hamburg'],\n", - " 'acronyms': ['UHH'],\n", - " 'labels': [],\n", - " 'ror': '00g30e956',\n", - " 'url': ['http://www.uni-hamburg.de'],\n", - " 'established': 1919,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 53.55073,\n", - " 'lon': 9.99302,\n", - " 'city': 'Hamburg',\n", - " 'country': ['Germany', 'DE']},\n", - " 'consortiums': []},\n", - " 'UReading': {'identifiers': {'institution_name': 'University of Reading',\n", - " 'aliases': [],\n", - " 'acronyms': [],\n", - " 'labels': [],\n", - " 'ror': '05v62cm79',\n", - " 'url': ['http://www.reading.ac.uk/'],\n", - " 'established': 1926,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 51.440832,\n", - " 'lon': -0.942503,\n", - " 'city': 'Reading',\n", - " 'country': ['United Kingdom', 'GB']},\n", - " 'consortiums': []},\n", - " 'UW': {'identifiers': {'institution_name': 'University of Washington',\n", - " 'aliases': [],\n", - " 'acronyms': ['UW'],\n", - " 'labels': [],\n", - " 'ror': '00cvxb145',\n", - " 'url': ['http://www.washington.edu/'],\n", - " 'established': 1861,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 47.60621,\n", - " 'lon': -122.33207,\n", - " 'city': 'Seattle',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'UoM': {'identifiers': {'institution_name': 'University of Melbourne',\n", - " 'aliases': ['Melbourne University'],\n", - " 'acronyms': [],\n", - " 'labels': [],\n", - " 'ror': '01ej9dk98',\n", - " 'url': ['http://www.unimelb.edu.au/'],\n", - " 'established': 1853,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': -37.814,\n", - " 'lon': 144.96332,\n", - " 'city': 'Melbourne',\n", - " 'country': ['Australia', 'AU']},\n", - " 'consortiums': []},\n", - " 'UofMD': {'identifiers': {'institution_name': 'University of Maryland, College Park',\n", - " 'aliases': [],\n", - " 'acronyms': ['UMD'],\n", - " 'labels': [],\n", - " 'ror': '047s2c258',\n", - " 'url': ['http://www.umd.edu/'],\n", - " 'established': 1856,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 38.98067,\n", - " 'lon': -76.93692,\n", - " 'city': 'College Park',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []},\n", - " 'VUA': {'identifiers': {'institution_name': 'Vrije Universiteit Amsterdam',\n", - " 'aliases': ['VU Amsterdam'],\n", - " 'acronyms': ['VU'],\n", - " 'labels': [],\n", - " 'ror': '008xxew50',\n", - " 'url': ['https://vu.nl/'],\n", - " 'established': 1880,\n", - " 'type': 'Education'},\n", - " 'location': {'lat': 52.37403,\n", - " 'lon': 4.88969,\n", - " 'city': 'Amsterdam',\n", - " 'country': ['Netherlands', 'NL']},\n", - " 'consortiums': []}},\n", - " 'version_metadata': {'version_tag': 'v6.5.0.2',\n", - " 'checksum': 'md5: 77cb0ee5320b6c869410e8f431807ff6',\n", - " 'MIP_institutions_modified': 'Sat Apr 20 23:41:28 2024 +0100',\n", - " 'MIP_institutions_note': 'Issues, Templates, and Action scripts update (#49)',\n", - " 'commit': '0d6b27424192b3b07cc8394e85162122871c8d7a',\n", - " 'previous_commit': '',\n", - " 'author': 'Dan Ellis ',\n", - " 'CV_collection_version': 'v6.5.1.3',\n", - " 'specs_doc': 'v6.5.0'}}" - ] - }, - "execution_count": 4, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "institutions" - ] - }, - { - "cell_type": "code", - "execution_count": 11, - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "('AER',\n", - " {'identifiers': {'institution_name': 'Atmospheric and Environmental Research',\n", - " 'aliases': [],\n", - " 'acronyms': ['AER'],\n", - " 'labels': [],\n", - " 'ror': '04cg70g73',\n", - " 'url': ['http://www.aer.com/'],\n", - " 'established': 1977,\n", - " 'type': 'Facility'},\n", - " 'location': {'lat': 42.539472,\n", - " 'lon': -71.256946,\n", - " 'city': 'Lexington',\n", - " 'country': ['United States', 'US']},\n", - " 'consortiums': []})" - ] - }, - "execution_count": 11, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "item = list(institutions['institutions'].items())[0]\n", - "item" - ] - }, - { - "cell_type": "code", - "execution_count": 38, - "metadata": {}, - "outputs": [], - "source": [ - "\n", - "def parse_institution (item):\n", - "\n", - " val = item[1]['identifiers']\n", - " contents = []\n", - "\n", - " updated = {\n", - " \"@id\": f'mip-cmor-tables/institutions/{item[0].lower()}',\n", - " \"@type\": \"cmip:institution\",\n", - " }\n", - "\n", - " updated['institution:cmip_acronym'] = item[0]\n", - " updated['institution:ror'] = val['ror']\n", - " updated['institution:name'] = val['institution_name']\n", - "\n", - " for i in 'url established type labels aliases acronyms'.split(): \n", - " updated[\"institution:\"+i] = val[i]\n", - "\n", - "\n", - " updated['institution:location'] = {\n", - " \"@id\": f\"mip-cmor-tables/institutions/location/{val['ror']}\",\n", - " \"@type\": \"institution:location\"\n", - " }\n", - "\n", - "\n", - "\n", - " newloc = {}\n", - " for i in item[1]['location']:\n", - " newloc['location:'+i] = item[1]['location'][i]\n", - " \n", - "\n", - " updated['institution:location'].update({\"@nest\": newloc})\n", - " return updated\n", - "\n", - "\n" - ] - }, - { - "cell_type": "code", - "execution_count": 39, - "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "100%|██████████| 56/56 [00:00<00:00, 100.25it/s]\n" - ] - } - ], - "source": [ - "import tqdm \n", - "import json \n", - "for item in tqdm.tqdm(institutions['institutions'].items()):\n", - " data = parse_institution(item)\n", - " json.dump(data,open(f'./institutions/{item[0]}.json','w'),indent=4)\n", - " \n", - " \n" - ] - }, - { - "cell_type": "code", - "execution_count": 46, - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "{'consortiums': {'CNRM-CERFACS': {'name': 'CNRM-CERFACS',\n", - " 'contains': ['CNRM (Centre National de Recherches Meteorologiques, Toulouse 31057, France)',\n", - " 'CERFACS (Centre Europeen de Recherche et de Formation Avancee en Calcul Scientifique, Toulouse 31057, France)']},\n", - " 'CNRM-Cerfacs': {'name': 'CNRM-Cerfacs',\n", - " 'contains': ['CNRM (Centre National de Recherches Meteorologiques, Toulouse 31057, France), CERFACS (Centre Europeen de Recherche et de Formation Avancee en Calcul Scientifique, Toulouse 31100, France)']},\n", - " 'CSIRO-ARCCSS': {'name': 'CSIRO-ARCCSS',\n", - " 'contains': ['CSIRO (Commonwealth Scientific and Industrial Research Organisation, Aspendale, Victoria 3195, Australia)',\n", - " 'ARCCSS (Australian Research Council Centre of Excellence for Climate System Science)']},\n", - " 'CSIRO-COSIMA': {'name': 'CSIRO-COSIMA',\n", - " 'contains': ['CSIRO (Commonwealth Scientific and Industrial Research Organisation, Australia)',\n", - " 'COSIMA (Consortium for Ocean-Sea Ice Modelling in Australia)']},\n", - " 'DLR-BIRA': {'name': 'DLR-BIRA',\n", - " 'contains': ['Deutsches Zentrum fur Luft- und Raumfahrt',\n", - " 'Royal Belgian Institute for Space Aeronomy']},\n", - " 'E3SM-Project': {'name': 'E3SM-Project',\n", - " 'contains': ['LLNL (Lawrence Livermore National Laboratory, Livermore, CA 94550, USA)',\n", - " 'ANL (Argonne National Laboratory, Argonne, IL 60439, USA)',\n", - " 'BNL (Brookhaven National Laboratory, Upton, NY 11973, USA)',\n", - " 'LANL (Los Alamos National Laboratory, Los Alamos, NM 87545, USA)',\n", - " 'LBNL (Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA)',\n", - " 'ORNL (Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA)',\n", - " 'PNNL (Pacific Northwest National Laboratory, Richland, WA 99352, USA)',\n", - " 'SNL (Sandia National Laboratories, Albuquerque, NM 87185, USA)']},\n", - " 'EC-Earth-Consortium': {'name': 'EC-Earth-Consortium',\n", - " 'contains': ['AEMET, Spain',\n", - " 'BSC, Spain',\n", - " 'CNR-ISAC, Italy',\n", - " 'DMI, Denmark',\n", - " 'ENEA, Italy',\n", - " 'FMI, Finland',\n", - " 'Geomar, Germany',\n", - " 'ICHEC, Ireland',\n", - " 'ICTP, Italy',\n", - " 'IDL, Portugal',\n", - " 'IMAU, The Netherlands',\n", - " 'IPMA, Portugal',\n", - " 'KIT, Karlsruhe, Germany',\n", - " 'KNMI, The Netherlands',\n", - " 'Lund University, Sweden',\n", - " 'Met Eireann, Ireland',\n", - " 'NLeSC, The Netherlands',\n", - " 'NTNU, Norway',\n", - " 'Oxford University, UK',\n", - " 'surfSARA, The Netherlands',\n", - " 'SMHI, Sweden',\n", - " 'Stockholm University, Sweden',\n", - " 'Unite ASTR, Belgium',\n", - " 'University College Dublin, Ireland',\n", - " 'University of Bergen, Norway',\n", - " 'University of Copenhagen, Denmark',\n", - " 'University of Helsinki, Finland',\n", - " 'University of Santiago de Compostela, Spain',\n", - " 'Uppsala University, Sweden',\n", - " 'Utrecht University, The Netherlands',\n", - " 'Vrije Universiteit Amsterdam, the Netherlands',\n", - " 'Wageningen University, The Netherlands']},\n", - " 'ESPRI-IPSL': {'name': 'ESPRI-IPSL',\n", - " 'contains': ['Ensemble de Services Pour la Recherche',\n", - " 'Institut Pierre Simon Laplace (France)']},\n", - " 'FIO-QLNM': {'name': 'FIO-QLNM',\n", - " 'contains': ['FIO (First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China)',\n", - " 'QNLM (Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China)']},\n", - " 'HAMMOZ-Consortium': {'name': 'HAMMOZ-Consortium',\n", - " 'contains': ['ETH Zurich, Switzerland',\n", - " 'Max Planck Institut fur Meteorologie, Germany',\n", - " 'Forschungszentrum Julich, Germany',\n", - " 'University of Oxford, UK',\n", - " 'Finnish Meteorological Institute, Finland',\n", - " 'Leibniz Institute for Tropospheric Research, Germany',\n", - " 'Center for Climate Systems Modeling (C2SM) at ETH Zurich, Switzerland']},\n", - " 'IAMC': {'name': 'Integrated Assessment Modeling Consortium',\n", - " 'contains': ['Integrated Assessment Modeling Consortium']},\n", - " 'INCOIS-NIO-IPSL': {'name': 'INCOIS-NIO-IPSL',\n", - " 'contains': ['INCOIS(India)', 'NIO(India)', 'IPSL(France)']},\n", - " 'MESSy-Consortium': {'name': 'The Modular Earth Submodel System (MESSy) Consortium',\n", - " 'contains': ['Institute for Physics of the Atmosphere, Deutsches Zentrum fur Luft- und Raumfahrt (DLR), Wessling, Bavaria 82234, Germany']},\n", - " 'MIROC': {'name': 'MIROC',\n", - " 'contains': ['JAMSTEC (Japan Agency for Marine-Earth Science and Technology, Kanagawa 236-0001, Japan)',\n", - " 'AORI (Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba 277-8564, Japan)',\n", - " 'NIES (National Institute for Environmental Studies, Ibaraki 305-8506, Japan)',\n", - " 'R-CCS (RIKEN Center for Computational Science, Hyogo 650-0047, Japan)']},\n", - " 'NCC': {'name': 'NCC',\n", - " 'contains': ['NorESM Climate modeling Consortium consisting of CICERO (Center for International Climate and Environmental Research, Oslo 0349)',\n", - " 'MET-Norway (Norwegian Meteorological Institute, Oslo 0313)',\n", - " 'NERSC (Nansen Environmental and Remote Sensing Center, Bergen 5006)',\n", - " 'NILU (Norwegian Institute for Air Research, Kjeller 2027)',\n", - " 'UiB (University of Bergen, Bergen 5007)',\n", - " 'UiO (University of Oslo, Oslo 0313)',\n", - " 'UNI (Uni Research, Bergen 5008) Norway']},\n", - " 'NIMS-KMA': {'name': 'NIMS-KMA',\n", - " 'contains': ['National Institute of Meteorological Sciences',\n", - " 'Korea Meteorological Administration']},\n", - " 'NOAA-GFDL': {'name': 'NOAA-GFDL',\n", - " 'contains': ['National Oceanic and Atmospheric Administration',\n", - " 'Geophysical Fluid Dynamics Laboratory, Princeton, NJ 08540, USA']},\n", - " 'PCMDI': {'name': 'PCMDI',\n", - " 'contains': ['Program for Climate Model Diagnosis and Intercomparison',\n", - " 'Lawrence Livermore National Laboratory, Livermore, CA 94550, USA']},\n", - " 'RTE-RRTMGP-Consortium': {'name': 'RTE-RRTMGP-Consortium',\n", - " 'contains': ['AER (Atmospheric and Environmental Research, Lexington, MA 02421, USA)',\n", - " 'UColorado (University of Colorado, Boulder, CO 80309, USA)']},\n", - " 'RUBISCO': {'name': 'RUBISCO',\n", - " 'contains': ['ORNL (Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA)',\n", - " 'ANL (Argonne National Laboratory, Argonne, IL 60439, USA)',\n", - " 'BNL (Brookhaven National Laboratory, Upton, NY 11973, USA)',\n", - " 'LANL (Los Alamos National Laboratory, Los Alamos, NM 87545)',\n", - " 'LBNL (Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA)',\n", - " 'NAU (Northern Arizona University, Flagstaff, AZ 86011, USA)',\n", - " 'NCAR (National Center for Atmospheric Research, Boulder, CO 80305, USA)',\n", - " 'UCI (University of California Irvine, Irvine, CA 92697, USA)',\n", - " 'UM (University of Michigan, Ann Arbor, MI 48109, USA)']},\n", - " 'UCSD-SIO': {'name': 'UCSD-SIO',\n", - " 'contains': ['University of California, San Diego',\n", - " 'Scripps Institution of Oceanography']}},\n", - " 'version_metadata': {'version_tag': 'v6.5.0.1',\n", - " 'checksum': 'md5: 96043a8112e6596024a6f5269723e950',\n", - " 'MIP_consortiums_modified': 'Thu Feb 29 16:22:42 2024 +0000',\n", - " 'MIP_consortiums_note': 'Updating versioning and model_components scripts to process files individually.',\n", - " 'commit': 'b852d25617891870139ff10a7c50bd5830ec0d29',\n", - " 'previous_commit': '',\n", - " 'author': 'Daniel Ellis',\n", - " 'CV_collection_version': 'v6.5.1.1',\n", - " 'specs_doc': 'v6.5.0'}}" - ] - }, - "execution_count": 46, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "inst = [i.lower() for i in institutions['institutions'].keys()]\n" - ] - }, - { - "cell_type": "code", - "execution_count": 57, - "metadata": {}, - "outputs": [ - { - "name": "stderr", - "output_type": "stream", - "text": [ - "100%|██████████| 21/21 [00:00<00:00, 1769.29it/s]" - ] - }, - { - "name": "stdout", - "output_type": "stream", - "text": [ - "{'CNRM-CERFACS': ['CNRM (Centre National de Recherches Meteorologiques, Toulouse 31057, France)', 'CERFACS (Centre Europeen de Recherche et de Formation Avancee en Calcul Scientifique, Toulouse 31057, France)'], 'CNRM-Cerfacs': ['CNRM (Centre National de Recherches Meteorologiques, Toulouse 31057, France), CERFACS (Centre Europeen de Recherche et de Formation Avancee en Calcul Scientifique, Toulouse 31100, France)'], 'CSIRO-ARCCSS': ['ARCCSS (Australian Research Council Centre of Excellence for Climate System Science)'], 'CSIRO-COSIMA': ['COSIMA (Consortium for Ocean-Sea Ice Modelling in Australia)'], 'DLR-BIRA': ['Deutsches Zentrum fur Luft- und Raumfahrt', 'Royal Belgian Institute for Space Aeronomy'], 'E3SM-Project': ['ANL (Argonne National Laboratory, Argonne, IL 60439, USA)', 'BNL (Brookhaven National Laboratory, Upton, NY 11973, USA)', 'LANL (Los Alamos National Laboratory, Los Alamos, NM 87545, USA)', 'LBNL (Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA)', 'ORNL (Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA)', 'PNNL (Pacific Northwest National Laboratory, Richland, WA 99352, USA)', 'SNL (Sandia National Laboratories, Albuquerque, NM 87185, USA)'], 'EC-Earth-Consortium': ['AEMET, Spain', 'BSC, Spain', 'CNR-ISAC, Italy', 'DMI, Denmark', 'ENEA, Italy', 'FMI, Finland', 'Geomar, Germany', 'ICHEC, Ireland', 'ICTP, Italy', 'IDL, Portugal', 'IMAU, The Netherlands', 'IPMA, Portugal', 'KIT, Karlsruhe, Germany', 'KNMI, The Netherlands', 'Lund University, Sweden', 'Met Eireann, Ireland', 'NLeSC, The Netherlands', 'NTNU, Norway', 'Oxford University, UK', 'surfSARA, The Netherlands', 'SMHI, Sweden', 'Stockholm University, Sweden', 'Unite ASTR, Belgium', 'University College Dublin, Ireland', 'University of Bergen, Norway', 'University of Copenhagen, Denmark', 'University of Helsinki, Finland', 'University of Santiago de Compostela, Spain', 'Uppsala University, Sweden', 'Utrecht University, The Netherlands', 'Vrije Universiteit Amsterdam, the Netherlands', 'Wageningen University, The Netherlands'], 'ESPRI-IPSL': ['Ensemble de Services Pour la Recherche', 'Institut Pierre Simon Laplace (France)'], 'FIO-QLNM': ['FIO (First Institute of Oceanography, Ministry of Natural Resources, Qingdao 266061, China)', 'QNLM (Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China)'], 'HAMMOZ-Consortium': ['ETH Zurich, Switzerland', 'Max Planck Institut fur Meteorologie, Germany', 'Forschungszentrum Julich, Germany', 'University of Oxford, UK', 'Finnish Meteorological Institute, Finland', 'Leibniz Institute for Tropospheric Research, Germany', 'Center for Climate Systems Modeling (C2SM) at ETH Zurich, Switzerland'], 'IAMC': ['Integrated Assessment Modeling Consortium'], 'INCOIS-NIO-IPSL': ['INCOIS(India)', 'NIO(India)', 'IPSL(France)'], 'MESSy-Consortium': ['Institute for Physics of the Atmosphere, Deutsches Zentrum fur Luft- und Raumfahrt (DLR), Wessling, Bavaria 82234, Germany'], 'MIROC': ['JAMSTEC (Japan Agency for Marine-Earth Science and Technology, Kanagawa 236-0001, Japan)', 'AORI (Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba 277-8564, Japan)', 'NIES (National Institute for Environmental Studies, Ibaraki 305-8506, Japan)', 'R-CCS (RIKEN Center for Computational Science, Hyogo 650-0047, Japan)'], 'NCC': ['NorESM Climate modeling Consortium consisting of CICERO (Center for International Climate and Environmental Research, Oslo 0349)', 'MET-Norway (Norwegian Meteorological Institute, Oslo 0313)', 'NERSC (Nansen Environmental and Remote Sensing Center, Bergen 5006)', 'NILU (Norwegian Institute for Air Research, Kjeller 2027)', 'UiB (University of Bergen, Bergen 5007)', 'UiO (University of Oslo, Oslo 0313)', 'UNI (Uni Research, Bergen 5008) Norway'], 'NIMS-KMA': ['National Institute of Meteorological Sciences', 'Korea Meteorological Administration'], 'NOAA-GFDL': ['National Oceanic and Atmospheric Administration', 'Geophysical Fluid Dynamics Laboratory, Princeton, NJ 08540, USA'], 'PCMDI': ['Program for Climate Model Diagnosis and Intercomparison', 'Lawrence Livermore National Laboratory, Livermore, CA 94550, USA'], 'RTE-RRTMGP-Consortium': [], 'RUBISCO': ['ORNL (Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA)', 'ANL (Argonne National Laboratory, Argonne, IL 60439, USA)', 'BNL (Brookhaven National Laboratory, Upton, NY 11973, USA)', 'LANL (Los Alamos National Laboratory, Los Alamos, NM 87545)', 'LBNL (Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA)', 'NAU (Northern Arizona University, Flagstaff, AZ 86011, USA)', 'UM (University of Michigan, Ann Arbor, MI 48109, USA)'], 'UCSD-SIO': ['University of California, San Diego', 'Scripps Institution of Oceanography']}\n" - ] - }, - { - "name": "stderr", - "output_type": "stream", - "text": [ - "\n" - ] - } - ], - "source": [ - "\n", - "missing = {}\n", - "\n", - "for i,j in tqdm.tqdm(consortiums['consortiums'].items()):\n", - " \n", - " \n", - " shortmiss = []\n", - " members = []\n", - " for k in j['contains']:\n", - " l = k.split()[0].lower()\n", - " if l in inst:\n", - " members.append({\"@id\": f'mip-cmor-tables/institutions/{l}'})\n", - " else:\n", - " members.append({\"@id\": f'{k}'})\n", - " shortmiss.append(k)\n", - " \n", - " missing[i] = shortmiss\n", - " \n", - " \n", - " entry = {\n", - " \"@id\": f'mip-cmor-tables/consortia/{i.lower()}',\n", - " \"@type\": \"cmip:consortium\",\n", - " \"consortium:cmip_acronym\":i,\n", - " \"consortium:description\":j['name'],\n", - " \"consortium:url\":\"\",\n", - " \"consortium:changes\":\"\",\n", - " \"consortium:members\":{\n", - " \"@set\": members,\n", - " }\n", - " \n", - " }\n", - " \n", - " \n", - " json.dump(entry,open(f'./consortia/{i.lower()}.json','w'),indent=4)\n", - " \n", - "print(missing)\n", - "with open('./consortia/missing.txt','w') as f:\n", - " json.dump(missing,f,indent=4)" - ] - }, - { - "cell_type": "code", - "execution_count": 48, - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "{'@id': 'mip-cmor-tables/consortium/cnrm-cerfacs',\n", - " '@type': 'cmip:consortium',\n", - " 'consortium:cmip_acronym': 'CNRM-CERFACS',\n", - " 'consortium:description': 'CNRM-CERFACS',\n", - " 'consortium:url': '',\n", - " 'consortium:changes': '',\n", - " 'consortium:members': {'@set': [{'@id': 'CNRM (Centre National de Recherches Meteorologiques, Toulouse 31057, France)'},\n", - " {'@id': 'CERFACS (Centre Europeen de Recherche et de Formation Avancee en Calcul Scientifique, Toulouse 31057, France)'}]}}" - ] - }, - "execution_count": 48, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "entry\n" - ] - }, - { - "cell_type": "code", - "execution_count": 51, - "metadata": {}, - "outputs": [ - { - "data": { - "text/plain": [ - "False" - ] - }, - "execution_count": 51, - "metadata": {}, - "output_type": "execute_result" - } - ], - "source": [ - "'pnnl' in inst" - ] - }, - { - "cell_type": "code", - "execution_count": null, - "metadata": {}, - "outputs": [], - "source": [] - } - ], - "metadata": { - "kernelspec": { - "display_name": "base", - "language": "python", - "name": "python3" - }, - "language_info": { - "codemirror_mode": { - "name": "ipython", - "version": 3 - }, - "file_extension": ".py", - "mimetype": "text/x-python", - "name": "python", - "nbconvert_exporter": "python", - "pygments_lexer": "ipython3", - "version": "3.10.10" - } - }, - "nbformat": 4, - "nbformat_minor": 2 -} diff --git a/JSONLD/archive/showcase /developement/script_institutions-demo.js b/JSONLD/archive/showcase /developement/script_institutions-demo.js deleted file mode 100644 index 735947bba..000000000 --- a/JSONLD/archive/showcase /developement/script_institutions-demo.js +++ /dev/null @@ -1,137 +0,0 @@ -// Load the jsonld.js library -const jsonld = require('jsonld'); -const fs = require('fs').promises; -const path = require('path'); -const { isContext } = require('vm'); - - -async function readDirectory(dirPath) { - const filesObj = { 'context': {}, 'graph': {} }; - - const files = await fs.readdir(dirPath); - - await Promise.all(files.map(async file => { - const filePath = path.join(dirPath, file); - const stats = await fs.stat(filePath); - - var kind = filePath.includes('context.json') ? 'context' : 'graph' - - if (stats.isDirectory()) { - - if (kind === 'context') { - filesObj[kind] = { ...filesObj[kind], ...await readDirectory(filePath) } - } else { - filesObj[kind][file] = await readDirectory(filePath); - } - } else { - if (path.extname(file) === '.json') { - try { - const data = await fs.readFile(filePath, 'utf8'); - if (kind === 'context') { - filesObj[kind] = { ...filesObj[kind], ...filesObj[kind][file] = JSON.parse(data) } - } else { - filesObj[kind][file] = JSON.parse(data) - } - - } catch (error) { - console.error(`Error reading JSON file ${filePath}:`, error); - } - } - } - })); - - // filesObj was a dictionary with filename and contents. - // must have context in repo - - console.log(Object.values(filesObj)) - - - const combinedData = Object.values(filesObj).filter().reduce((result, item) => { - // Combine context objects - result.context = { ...result.context, ...item.context }; - - // Combine graph objects - Object.values(item.graph).forEach(obj => { - result.graph.push(obj); - }); - - return result; - - }, { context: {}, graph: [] }); - - return combinedData; -} - - - - -async function main() { - try { - const directoryPath = './'; - const filesObj = await readDirectory(directoryPath); - - - - entries = filesObj.map(d=>d['graph']) - - console.log(entries) - - // await fs.writeFile('output.json', JSON.stringify(filesObj, null, 2)); - // console.log('Files object written to output.json'); - - - - const frame = { - "@context": { - "id": "@id", - "type": "@type", - "long_name": "institution:name", - "ror": "institution:ror", - // "location":"institution:location", - "location": { - "@context": { - "@vocab": "location:", - } - }, - // "@explicit": true - "@base": "institution:", - "@vocab": "institution:", - - }, - - - "@type": "cmip:institution", - "long_name": "", // Use the 'a:name' property in the frame - "ror": "", - "location": {}, - // "schema:memberOf":{"name":""}, - "@explicit": true, - "@omitDefault": true, - "@embed": "@always", - "@propagateNamespaceRefs": false - }; - - - - console.log(entries) - - - await jsonld.frame(entries, frame) - - // .then((framed) => { - - // return JSON.stringify(framed) - // }) - .then(d => d['@graph'][0]) - .then(console.warn); - - - - } catch (error) { - console.error('Error:', error); - } - - -} - -main(); diff --git a/JSONLD/archive/showcase /developement/test/jsonld_institutions.js b/JSONLD/archive/showcase /developement/test/jsonld_institutions.js deleted file mode 100644 index 4eb621d42..000000000 --- a/JSONLD/archive/showcase /developement/test/jsonld_institutions.js +++ /dev/null @@ -1,171 +0,0 @@ -// Load the jsonld.js library -const jsonld = require('jsonld'); -const fs = require('fs').promises; -const path = require('path'); -const { isContext } = require('vm'); - - -async function readDirectory(dirPath) { - const filesObj = {}; - - const files = await fs.readdir(dirPath); - - await Promise.all(files.map(async file => { - const filePath = path.join(dirPath, file); - const stats = await fs.stat(filePath); - - if (stats.isDirectory()) { - filesObj[file] = await readDirectory(filePath); - } else { - if (path.extname(file) === '.json') { - try { - const data = await fs.readFile(filePath, 'utf8'); - filesObj[file] = JSON.parse(data); - } catch (error) { - console.error(`Error reading JSON file ${filePath}:`, error); - } - } - } - })); - - return filesObj; -} - - -async function main() { - try { - const directoryPath = './Institutions'; - const filesObj = await readDirectory(directoryPath); - - values = Object.values(filesObj) - - console.log(values) - - // await fs.writeFile('output.json', JSON.stringify(filesObj, null, 2)); - // console.log('Files object written to output.json'); - - - - const frame = { - "@context":{ - "id": "@id", - "type": "@type", - "long_name":"institution:name", - "ror":"institution:ror", - // "location":"institution:location", - "location":{"@context":{ - "@vocab":"location:", - } - }, - // "@explicit": true - "@base":"institution:", - "@vocab":"institution:", - - }, - "@type": "cmip:institution", - "long_name": "", // Use the 'a:name' property in the frame - "ror":"", - "location":{}, - // "schema:memberOf":{"name":""}, - "@explicit": true, - "@omitDefault": true, - "@embed": "@always", - "@propagateNamespaceRefs": false - }; - - - - - await jsonld.frame(values, frame) - - // .then((framed) => { - - // return JSON.stringify(framed) - - // }) - .then(d=>d['@graph'][0]) - .then(console.warn); - - - - } catch (error) { - console.error('Error:', error); - } - - - - - const framelatlon = { - "@context":{ - // "id": "@id", - // "type": "@type", - // "long_name":"institution:name", - // "ror":"institution:ror", - // "location":"institution:location", - "@base":"location", - // "@vocab":"location:" - "location":"institution:location", - "@base":"location", - "@vocab":"location:", - - // "location": { - // "@id": "institution:location", - // "@type": "@id" - // }, - // "institute": { - // "@id": "cmip:institution", - // "@type": "@id" - // } - // "@explicit": true - }, - // "location":{}, - "institution":{}, - - // "@type": "location", - // "location:lat":{}, - // "location:lon":"", - // "lon":"", - - // "long_name": "", // Use the 'a:name' property in the frame - // "ror":"", - // "location":{ "@explicit": true,}, - // // "schema:memberOf":{"name":""}, - "@explicit": true, - // "@omitDefault": true, - // "@embed": "@always", - // "@propagateNamespaceRefs": false - - }; - - - // await jsonld.frame(values, framelatlon) - // .then(console.warn); - - - } - - /* - -"@container": "@set", - "@value": ["Alice", "Bob", "Charlie"] - - "address": { - "@nest": { - "street": "123 Main Street", - "city": "Anytown", - "country": "USA" - } - - { - "@context": { - "@vocab": "http://schema.org/" - }, - "@type": "Person", - "name": "John Doe", - "jobTitle": "Software Engineer" -} -In this example, the @context sets @vocab to "http://schema.org/", which means that properties like name and jobTitle will be expanded to "http://schema.org/name" and "http://schema.org/jobTitle" respectively when the JSON-LD document is processed. - - */ - -main(); diff --git a/JSONLD/archive/showcase /developement/test/jsonldtest.js b/JSONLD/archive/showcase /developement/test/jsonldtest.js deleted file mode 100644 index 6852743a5..000000000 --- a/JSONLD/archive/showcase /developement/test/jsonldtest.js +++ /dev/null @@ -1,125 +0,0 @@ -// Load the jsonld.js library -const jsonld = require('jsonld'); - -// Define your JSON-LD data -const data = [ - { - "@id": "http://example.org/organizations/1", - "@type": "schema:Organization", - "schema:name": "Organization A" - }, - { - "@id": "http://example.org/organizations/2", - "@type": "schema:Organization", - "schema:name": "Organization B" - }, - { - "@id": "http://example.org/people/1", - "@type": "schema:Person", - "schema:name": "John Doe", - "memberOf": { - "@id": "http://example.org/organizations/1" - } - }, - { - "@id": "http://example.org/people/2", - "@type": "schema:Person", - "schema:name": "Jane Smith", - "schema:memberOf": { - "@id": "http://example.org/organizations/2" - } - }, - { - "@context": {"name": "keep:name"}, - "@id": "http://example.org/people/3", - "@type": "schema:Person", - "schema:name": "Alice Johnson", - "schema:memberOf": { - "@id": "http://example.org/organizations/1" - } - } -]; - - -// const frame = { -// "@context": { -// // "@base": "http://example.org/", -// // "@vocab": "http://schema.org/", -// // "keep":"aaa" -// [ -// { -// "@base": "http://example.org/" -// }, -// { -// "@base": "keep" -// } -// ] -// }, - -// "@type": "schema:Person", -// "keep.name": {"@id":{}}, -// // "schema:memberOf": { }, -// "@explicit": true, -// "@omitDefault": true, -// "@embed": "@always" -// } - - -const frame = { - "@context":{ - "name":"schema:name" - }, - "@type": "schema:Person", - "name": "", // Use the 'a:name' property in the frame - "schema:memberOf":{"name":""}, - "@explicit": true, - "@omitDefault": true, - "@embed": "@never", - "@propagateNamespaceRefs": true, - "@vocab":"location:", -}; - -// const context = { -// "name":"keep:name" -// }; - - -// Function to remove entries with "@" tags recursively -function removeAtTags(obj) { - for (const key in obj) { - if (typeof obj[key] === 'object') { - removeAtTags(obj[key]); // Recursively call for nested objects - } else if (Array.isArray(obj[key])) { - obj[key].forEach((item) => removeAtTags(item)); // Recursively call for arrays - } else if (key.startsWith('@')) { - delete obj[key]; // Delete entry if key starts with "@" - } - } - return obj; -} - - - -function cleanAll(x){ - return x['@graph'] - // .map(removeAtTags) -} -// Remove "@" tagged entries -// const cleanedObject = removeAtTags(jsonldObject); - - - - -// frame a document -jsonld.frame(data ,frame,(err, framed) => { - // document transformed into a particular tree structure per the given frame - - - - return framed - - }).then(cleanAll).then(d=>{ console.log(d); return JSON.stringify(d)}) - .then(console.warn); - - - console.log(jsonld.frame) \ No newline at end of file diff --git a/JSONLD/archive/showcase /developement/test/output.json b/JSONLD/archive/showcase /developement/test/output.json deleted file mode 100644 index 21d502530..000000000 --- a/JSONLD/archive/showcase /developement/test/output.json +++ /dev/null @@ -1,1551 +0,0 @@ -{ - 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}, - { - "location": { - "lat": 34.42083, - "lon": -119.69819 - }, - "name": "University of California, Santa Barbara" - }, - { - "location": { - "lat": 53.55073, - "lon": 9.99302 - }, - "name": "Universität Hamburg" - }, - { - "location": { - "lat": 38.98067, - "lon": -76.93692 - }, - "name": "University of Maryland, College Park" - }, - { - "location": { - "lat": -37.814, - "lon": 144.96332 - }, - "name": "University of Melbourne" - }, - { - "location": { - "lat": 51.440832, - "lon": -0.942503 - }, - "name": "University of Reading" - }, - { - "location": { - "lat": 47.60621, - "lon": -122.33207 - }, - "name": "University of Washington" - }, - { - "location": { - "lat": 52.37403, - "lon": 4.88969 - }, - "name": "Vrije Universiteit Amsterdam" - } -] diff --git a/JSONLD/archive/showcase /script_institution_map.js b/JSONLD/archive/showcase /script_institution_map.js deleted file mode 100644 index d6a3894ae..000000000 --- a/JSONLD/archive/showcase /script_institution_map.js +++ /dev/null @@ -1,120 +0,0 @@ -// Load the jsonld.js library -const jsonld = require('jsonld'); -const fs = require('fs').promises; -const path = require('path'); -const { isContext } = require('vm'); - -// const fs = require('fs'); - -// Function to remove entries with "@" tags recursively -function removeAtTags(obj) { - for (const key in obj) { - if (typeof obj[key] === 'object') { - removeAtTags(obj[key]); // Recursively call for nested objects - } else if (Array.isArray(obj[key])) { - obj[key].forEach((item) => removeAtTags(item)); // Recursively call for arrays - } else if (key.startsWith('@')) { - delete obj[key]; // Delete entry if key starts with "@" - } - } - return obj; -} - - - - -// Function to read a JSON file -async function readJSONFile(filename) { - try { - const data = await fs.readFile(filename, 'utf8'); - return JSON.parse(data); - } catch (err) { - console.error(`Error reading file ${filename}:`, err); - return null; - } -} - - - - - - -async function main() { - try { - - - // Read graph data - const graphData = await readJSONFile('graph_data.json'); - const contextData = await readJSONFile('context_data.json'); - - - - // await fs.writeFile('output.json', JSON.stringify(filesObj, null, 2)); - // console.log('Files object written to output.json'); - - - console.warn('-----------------------') - - - const mapframe = { - "@context": - { "@vocab": "institution:", - "location": { - "@context": { - "@vocab": "location:" - } - }, - }, - "@type": "cmip:institution", - "@explicit": true, - "name":"", - "location":{"@explicit":true,"lat":{},"lon":{}}, - }; - - - - - - - - - - - - - // "@type": ["schema:Book", "schema:Magazine"], - - await jsonld.frame(graphData, mapframe) - - // .then((framed) => { - - // return JSON.stringify(framed) - // }) - .then(d => { - - const newd = removeAtTags(d['@graph']) - - - fs.writeFile('sample_generated/latlon_data.json', JSON.stringify(newd,null,4), (err) => { - if (err) { - console.error('Error writing to file:', err); - return; - } - console.log('JSON data has been written to data.json'); - }); - - return newd - - }) - .then(console.warn); - - - - } catch (error) { - console.error('Error:', error); - } - - -} - -main(); diff --git a/JSONLD/archive/showcase /script_institution_map_updated.js b/JSONLD/archive/showcase /script_institution_map_updated.js deleted file mode 100644 index 02558cf40..000000000 --- a/JSONLD/archive/showcase /script_institution_map_updated.js +++ /dev/null @@ -1,31 +0,0 @@ - -// Load the jsonld.js library -const cld = require('cmip_jld'); -// push each function into the global scope -Object.keys(cld).forEach(key => { - global[key] = cld[key]; -}); - -async function main() { - - const graphData = await cld.readFileFS('graph_data.json'); - - const mapframe = { - "@context":{ - "@vocab":'institution:', - "location":{"@context":{"@vocab":"location:"}} - }, - "@type": "cmip:institution", - "@explicit": true, - "name": "", - "location": { "@explicit": true,"lat":"", "lon":"" }, - }; - - await jsonld.frame(graphData, mapframe) - .then(stringify).then(rmld).then(str2JSON) - .then(json=>writeFile(json,'./lat_lon.json')) - - -} - -main(); diff --git a/JSONLD/archive/showcase /script_showcase_institutions.js b/JSONLD/archive/showcase /script_showcase_institutions.js deleted file mode 100644 index f6ba71e92..000000000 --- a/JSONLD/archive/showcase /script_showcase_institutions.js +++ /dev/null @@ -1,167 +0,0 @@ -// Load the jsonld.js library -const jsonld = require('jsonld'); -const fs = require('fs').promises; -const path = require('path'); -const { isContext } = require('vm'); - -// const fs = require('fs'); - -// Function to read a JSON file -async function readJSONFile(filename) { - try { - const data = await fs.readFile(filename, 'utf8'); - return JSON.parse(data); - } catch (err) { - console.error(`Error reading file ${filename}:`, err); - return null; - } -} - - -async function main() { - try { - - - // Read graph data - const graphData = await readJSONFile('graph_data.json'); - if (graphData) { - console.log('Graph Data:'); - console.log(graphData); - } - - // Read context data - const contextData = await readJSONFile('context_data.json'); - if (contextData) { - console.log('\nContext Data:'); - console.log(contextData); - } - - - - // await fs.writeFile('output.json', JSON.stringify(filesObj, null, 2)); - // console.log('Files object written to output.json'); - - - console.warn('-----------------------') - - // basic (all) data - const frame0 = { - "@type": "cmip:institution" - }; - - const frame1 = { - "@context": - { "@vocab": "institution:" }, - "@type": "cmip:institution", - }; - - const frame2 = { - "@context": - { "@vocab": "institution:" }, - "@type": "cmip:institution", - "@explicit": true, - }; - - - const frame3 = { - "@context": - { "@vocab": "institution:" }, - "@type": "cmip:institution", - "@explicit": true, - "name": "", - "ror": "" - }; - - - const frame4 = { - "@context": - { - ...contextData, - "@vocab": "institution:" - }, - "@type": "cmip:institution", - "@explicit": true, - "name": "", - "ror": "", - "location": {}, - }; - - - const frame5 = { - "@context": - { - "@vocab": "institution:", - "location": { - "@context": { - "@vocab": "location:" - } - }, - }, - "@type": "cmip:institution", - "@explicit": true, - "name": "", - "location": { "@explicit": true, "lat": {}, "lon": {} }, - }; - - - - const reverseframe = { - "@context": { - "@vocab": "institution:", - "locationOf": { - "@reverse": "institution:location" - } - }, - "@type": "institution:location", - - "@explicit": true, - "location:country": "", - "locationOf": { "@explicit": true, "institution:name": "" } - } - - - // const frame = { - // "@context": - // { - // ...contextData, - // // "@vocab": "institution:", - - - // } - // , - // "@explicit": true, - // "@type": ["cmip:institution", "cmip:consortium"], - // 'cmip_acronym':"", - // 'cmip_acronym':["consortium:cmip_acronym","institution:cmip_acronym"] - - // }; - - - - - - - - - - // "@type": ["schema:Book", "schema:Magazine"], - - await jsonld.frame(graphData, frame4) - - // .then((framed) => { - - // return JSON.stringify(framed) - // }) - .then(d => d['@graph'][0])//.slice(0,10)) - .then(console.warn); - - - - } catch (error) { - console.error('Error:', error); - } - - -} - -main(); diff --git a/JSONLD/scripts/archive.zip b/JSONLD/scripts/archive.zip new file mode 100644 index 000000000..31ea9e44f Binary files /dev/null and b/JSONLD/scripts/archive.zip differ diff --git a/JSONLD/scripts/frequency.py b/JSONLD/scripts/frequency.py index 3ed61ce5d..c793bcec9 100644 --- a/JSONLD/scripts/frequency.py +++ b/JSONLD/scripts/frequency.py @@ -14,7 +14,7 @@ frame = cmipld.Frame(lddata,frame).clean(['rmld','untag']) -data = cmipld.utils.sorted_dict(frame.keystr('name','description')) +data = cmipld.utils.sorted_dict(frame.key_value('name','description')) cmipld.utils.wjsn(finalise(data,name),base+f'/MIP_{name}.json') \ No newline at end of file diff --git a/JSONLD/scripts/grid_label.py b/JSONLD/scripts/grid_label.py index fbf0e525c..f4974c432 100644 --- a/JSONLD/scripts/grid_label.py +++ b/JSONLD/scripts/grid_label.py @@ -14,7 +14,7 @@ frame = cmipld.Frame(lddata,frame).clean(['rmld','untag']) -data = cmipld.utils.sorted_dict(frame.keystr('name','description')) +data = cmipld.utils.sorted_dict(frame.key_value('name','description')) cmipld.utils.wjsn(finalise(data,name),base+f'/MIP_{name}.json') \ No newline at end of file diff --git a/JSONLD/scripts/organisations.py b/JSONLD/scripts/organisations.py index fb099747d..cdb76af48 100644 --- a/JSONLD/scripts/organisations.py +++ b/JSONLD/scripts/organisations.py @@ -12,7 +12,7 @@ # await lddata frame = cmipld.Frame(lddata,frame).clean(['rmld','untag']) -data = cmipld.utils.sorted_dict(frame.filterkeys(['cmip-acronym','name','ror'],True,'consortium').keyval('cmip-acronym')) +data = cmipld.utils.sorted_dict(frame.filterkeys(['cmip-acronym','name','ror'],True,'consortium').key_value('cmip-acronym')) diff --git a/JSONLD/scripts/realm.py b/JSONLD/scripts/realm.py index c197fb556..04530ccb2 100644 --- a/JSONLD/scripts/realm.py +++ b/JSONLD/scripts/realm.py @@ -14,7 +14,7 @@ frame = cmipld.Frame(lddata,frame).clean(['rmld','untag']) -data = cmipld.utils.sorted_dict(frame.keystr('name','description')) +data = cmipld.utils.sorted_dict(frame.key_value('name','description')) cmipld.utils.wjsn(finalise(data,name),base+f'/MIP_{name}.json') \ No newline at end of file diff --git a/JSONLD/scripts/resolution.py b/JSONLD/scripts/resolution.py index 941f8755f..45d4879be 100644 --- a/JSONLD/scripts/resolution.py +++ b/JSONLD/scripts/resolution.py @@ -14,7 +14,7 @@ frame = cmipld.Frame(lddata,frame).clean(['rmld','untag']) -data = sorted(list(frame.keystr('name','description').keys())) +data = frame.key_value('name','description') cmipld.utils.wjsn(finalise(data,name),base+f'/MIP_{name}.json') \ No newline at end of file diff --git a/JSONLD/scripts/runall.sh b/JSONLD/scripts/runall.sh new file mode 100644 index 000000000..e69de29bb diff --git a/JSONLD/scripts/source_type.py b/JSONLD/scripts/source_type.py index 824c5bba1..e8962cd3c 100644 --- a/JSONLD/scripts/source_type.py +++ b/JSONLD/scripts/source_type.py @@ -14,7 +14,7 @@ frame = cmipld.Frame(lddata,frame).clean(['rmld','untag']) -data = cmipld.utils.sorted_dict(frame.keystr('name','description')) +data = cmipld.utils.sorted_dict(frame.key_value('name','description')) cmipld.utils.wjsn(finalise(data,name),base+f'/MIP_{name}.json') \ No newline at end of file diff --git a/JSONLD/scripts/test_all.py b/JSONLD/scripts/test_all.py new file mode 100644 index 000000000..2e282df52 --- /dev/null +++ b/JSONLD/scripts/test_all.py @@ -0,0 +1,5 @@ +def test_source(): + import source_type + +def test_realm(): + import realm diff --git a/MIP_frequency.json b/MIP_frequency.json index e0e6430a0..e8c8c3529 100644 --- a/MIP_frequency.json +++ b/MIP_frequency.json @@ -20,9 +20,9 @@ "version_metadata": { "version_tag": "v6.5.0.2", "checksum": "3c7e52f4dfb1ab132c7656da727a7ef1", - "commit": "35d0fa6542d26427fb3e4bd627c748de4149055e", - "previous_commit": "93ad52ad26d80c2466834e99d0af5c37b11f75e3", - "frequency_modified": "Thu, 12 Sep 2024 11:35:54 +0100", - "frequency_note": "frequency generation" + "commit": "315d15543e15a05eccae8ca50ccc254987544448", + "previous_commit": "f71997b7dd6b1bef27184f994ac1a5bf0c8eb4db", + "frequency_modified": "Thu, 12 Sep 2024 14:36:06 +0100", + "frequency_note": "archive zip" } } \ No newline at end of file diff --git a/MIP_grid_label.json b/MIP_grid_label.json index 7c5d39487..e56263247 100644 --- a/MIP_grid_label.json +++ b/MIP_grid_label.json @@ -49,9 +49,9 @@ "version_metadata": { "version_tag": "v6.5.0.2", "checksum": "cd66d317103ffb3ab0aab056b2066185", - "commit": "838354e69ea8fc9bacad71421cdbb44d32af3ffa", - "previous_commit": "35d0fa6542d26427fb3e4bd627c748de4149055e", - "grid_label_modified": "Thu, 12 Sep 2024 11:37:44 +0100", - "grid_label_note": "frequency generation" + "commit": "315d15543e15a05eccae8ca50ccc254987544448", + "previous_commit": "f71997b7dd6b1bef27184f994ac1a5bf0c8eb4db", + "grid_label_modified": "Thu, 12 Sep 2024 14:36:06 +0100", + "grid_label_note": "archive zip" } } \ No newline at end of file diff --git a/MIP_nominal_resolution.json b/MIP_nominal_resolution.json index 49d3e951f..1e25331d0 100644 --- a/MIP_nominal_resolution.json +++ b/MIP_nominal_resolution.json @@ -1,27 +1,27 @@ { - "nominal_resolution": [ - "0.5 km", - "1 km", - "10 km", - "100 km", - "1000 km", - "10000 km", - "1x1 degree", - "2.5 km", - "25 km", - "250 km", - "2500 km", - "5 km", - "50 km", - "500 km", - "5000 km" - ], + "nominal_resolution": { + "0.5 km": "Resolution of 0.5 km", + "10000 km": "Resolution of 10000 km", + "1000 km": "Resolution of 1000 km", + "100 km": "Resolution of 100 km", + "10 km": "Resolution of 10 km", + "1 km": "Resolution of 1 km", + "1x1 degree": "Resolution of 1x1 degree", + "2.5 km": "Resolution of 2.5 km", + "2500 km": "Resolution of 2500 km", + "250 km": "Resolution of 250 km", + "25 km": "Resolution of 25 km", + "5000 km": "Resolution of 5000 km", + "500 km": "Resolution of 500 km", + "50 km": "Resolution of 50 km", + "5 km": "Resolution of 5 km" + }, "version_metadata": { "version_tag": "v6.5.0.2", - "checksum": "d2db71e4d24eea1fd0215e8048f54f52", - "commit": "dbf69062454d78fa6638f3bde074e319669f1b8d", - "previous_commit": "dedfd73938ac9e9dd45ab62bb6a9c907a45ae3bf", - "nominal_resolution_modified": "Thu, 12 Sep 2024 11:43:30 +0100", - "nominal_resolution_note": "generate realm files" + "checksum": "09c160e6e834bd66411bb905b8a81170", + "commit": "315d15543e15a05eccae8ca50ccc254987544448", + "previous_commit": "f71997b7dd6b1bef27184f994ac1a5bf0c8eb4db", + "nominal_resolution_modified": "Thu, 12 Sep 2024 14:36:06 +0100", + "nominal_resolution_note": "archive zip" } } \ No newline at end of file diff --git a/MIP_organisations.json b/MIP_organisations.json index 4c446db06..e34bdc606 100644 --- a/MIP_organisations.json +++ b/MIP_organisations.json @@ -304,9 +304,9 @@ "version_metadata": { "version_tag": "v6.5.0.2", "checksum": "99bfef5021ed83dc56e25e3a61fef729", - "commit": "93ad52ad26d80c2466834e99d0af5c37b11f75e3", - "previous_commit": "e9c633ea7826be3e2d63c5894809e686546e8864", - "organisations_modified": "Tue, 10 Sep 2024 15:28:41 +0100", - "organisations_note": "initial organisations framing script." + "commit": "315d15543e15a05eccae8ca50ccc254987544448", + "previous_commit": "f71997b7dd6b1bef27184f994ac1a5bf0c8eb4db", + "organisations_modified": "Thu, 12 Sep 2024 14:36:06 +0100", + "organisations_note": "archive zip" } } \ No newline at end of file diff --git a/MIP_realm.json b/MIP_realm.json index 9b21d7a8f..c73764327 100644 --- a/MIP_realm.json +++ b/MIP_realm.json @@ -12,9 +12,9 @@ "version_metadata": { "version_tag": "v6.5.0.2", "checksum": "907de404ca24450a0b400451c483c743", - "commit": "dedfd73938ac9e9dd45ab62bb6a9c907a45ae3bf", - "previous_commit": "838354e69ea8fc9bacad71421cdbb44d32af3ffa", - "realm_modified": "Thu, 12 Sep 2024 11:41:19 +0100", - "realm_note": "grid generation" + "commit": "315d15543e15a05eccae8ca50ccc254987544448", + "previous_commit": "f71997b7dd6b1bef27184f994ac1a5bf0c8eb4db", + "realm_modified": "Thu, 12 Sep 2024 14:36:06 +0100", + "realm_note": "archive zip" } } \ No newline at end of file diff --git a/MIP_source_type.json b/MIP_source_type.json index eefd401d0..4cc1688ea 100644 --- a/MIP_source_type.json +++ b/MIP_source_type.json @@ -14,9 +14,9 @@ "version_metadata": { "version_tag": "v6.5.0.2", "checksum": "e050a90c2ef4a347b3f0a95103714178", - "commit": "f78f9858580e7ba7603c5f87b14d3e7413acaebd", - "previous_commit": "8255c9ed6dcf953cfdb23952c1f18eb50dd31b86", - "source_type_modified": "Thu, 12 Sep 2024 11:47:59 +0100", - "source_type_note": "generate resolution" + "commit": "315d15543e15a05eccae8ca50ccc254987544448", + "previous_commit": "f71997b7dd6b1bef27184f994ac1a5bf0c8eb4db", + "source_type_modified": "Thu, 12 Sep 2024 14:36:06 +0100", + "source_type_note": "archive zip" } } \ No newline at end of file