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I am analyzing TMB using the tcgaCompare function in maftools. My dataset includes WGS data and WES data captured with the Agilent SureSelect V4+UTRs kit. What values should I use for the capture_size parameter in the TMB function to compare it with TCGA for WGS and WES (targeted coding regions from the Agilent SureSelect V4+UTRs kit)?
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I am analyzing TMB using the tcgaCompare function in maftools. My dataset includes WGS data and WES data captured with the Agilent SureSelect V4+UTRs kit. What values should I use for the capture_size parameter in the TMB function to compare it with TCGA for WGS and WES (targeted coding regions from the Agilent SureSelect V4+UTRs kit)?
Thank you
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