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complex.html
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<!DOCTYPE html>
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<meta name="author" content="Reinhold Kliegl" />
<title>Workflow for a complex LMM example</title>
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<h1 class="title toc-ignore">Workflow for a complex LMM example</h1>
<h4 class="author">Reinhold Kliegl</h4>
</div>
<ul>
<li><a href="https://github.com/RePsychLing/MRK17_Exp1">Github Repository</a> <code>git clone https://github.com/RePsychLing/MRK17_Exp1.git</code></li>
</ul>
<div id="setting-up" class="section level3">
<h3>Setting up</h3>
<ul>
<li>In VSCode open julia REPL (⇧⌘P) and type “;” to access the shell
<ul>
<li>shell> <code>cd /dir/where/repo/goes/</code></li>
<li>shell> <code>git clone https://github.com/RePsychLing/MRK17_Exp1.git</code></li>
<li>shell> <code>cd MRK17_Exp1</code></li>
</ul></li>
<li>Open the <code>MRK17_Exp1</code> directory in VSCode</li>
<li>Open the file <code>MRK17_Exp1_rk01.jmd</code></li>
<li>Shift-cmd-P to open the commands window and search for <code>Julia: Start REPL</code></li>
<li>Type <code>]</code> in the Terminal window in VSCode to get the <code>pkg</code> prompt</li>
<li>pkg> <code>activate .</code></li>
<li>Add/update some packages (get the <code>pkg</code> prompt with <code>]</code>)
<ul>
<li>pkg> <code>add MixedModels#master</code></li>
<li>pkg> <code>st</code></li>
</ul></li>
<li>Use backspace to get back to the julia prompt</li>
</ul>
<p>Illustrate execution from <code>jmd</code> file.</p>
<p>Illustrate execution from <code>ipynb</code> file</p>
<ul>
<li>julia> <code>using Weave</code></li>
<li>julia> <code>convert_doc("MRK17_Exp1_rk01.jmd", "MRK17_Exp1_rk01.ipynb")</code></li>
<li>julia> <code>using IJulia</code></li>
<li>julia> <code>IJulia.notebook(dir=".")</code></li>
</ul>
</div>
<div id="notes" class="section level3">
<h3>Notes</h3>
<ul>
<li>Don’t look at fixed effects before model selection</li>
<li>Preface random effect specification with <code>zerocorr</code> is very roughly comparable to “||” lme4-syntax.</li>
</ul>
</div>
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