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DESCRIPTION
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DESCRIPTION
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Package: escape
Title: Easy single cell analysis platform for enrichment
Version: 1.1.1
Date: 2020-11-05
Authors@R: c(
person(given = "Nick", family = "Borcherding", role = c("aut", "cre"), email = "ncborch@gmail.com"),
person(given = "Jared", family = "Andrews", role = c("aut"), email = "jared.andrews07@gmail.com"))
Description: A bridging R package to facilitate gene set enrichment analysis (GSEA) in the context of single-cell RNA sequencing. Using raw count information, Seurat objects, or SingleCellExperiment format, users can perform and visualize GSEA across individual cells.
License: Apache License 2.0
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
biocViews: Software, SingleCell, Classification, Annotation, GeneSetEnrichment, Sequencing, GeneSignaling, Pathways
Depends: R (>= 3.6.3)
Imports:
grDevices,
dplyr,
ggplot2,
GSEABase,
GSVA,
SingleCellExperiment,
limma,
ggridges,
msigdbr,
stats,
BiocParallel
Suggests:
Seurat,
knitr,
rmarkdown,
BiocStyle,
testthat,
dittoSeq (>= 1.1.2)
VignetteBuilder: knitr