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psipred terminated error #3

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Sabryr opened this issue Aug 29, 2021 · 2 comments
Open

psipred terminated error #3

Sabryr opened this issue Aug 29, 2021 · 2 comments

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@Sabryr
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Sabryr commented Aug 29, 2021

*** buffer overflow detected ***: psipred terminated
xx/1.0.0.2/RoseTTAFold/input_prep/make_ss.sh: line 19: 1324074 Aborted (core dumped) psipred $ID.mtx $DATADIR/weights.dat $DATADIR/weights.dat2 $DATADIR/weights.dat3 > $ID.ss
Bad psipred pass1 file format!
rm: cannot remove 'xxProteinFolding/RoseTTAFold/test/t000_.msa0.a3m.csb.hhblits.ss2': No such file or directory

@Sabryr
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Sabryr commented Aug 29, 2021

Fixed by making the following linbe to
RoseTTAFold/input_prep

export BLASTMAT=/share/blast-2.2.26/data


#!/bin/bash

export BLASTMAT=/cluster/software/RoseTTAFold/1.0.0.2/share/blast-2.2.26/data
DATADIR="$CONDA_PREFIX/share/psipred_4.01/data"
echo $DATADIR

i_a3m="$1"
o_ss="$2"

@Sabryr
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Sabryr commented Aug 29, 2021

This fix also solved #2

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