From 72205b60508173a5ff30a4f572972a095f145608 Mon Sep 17 00:00:00 2001
From: bwmac <bwm03570@gmail.com>
Date: Fri, 7 Jun 2024 15:27:12 -0600
Subject: [PATCH 1/2] adds run_id

---
 main.nf | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/main.nf b/main.nf
index 9c2063c..c4343a6 100644
--- a/main.nf
+++ b/main.nf
@@ -3,7 +3,7 @@ nextflow.enable.dsl = 2
 
 //runs test config for Agora
 process AGORA_DATA_RUN {
-
+    debug = true
 
     container "ghcr.io/sage-bionetworks/agora-data-tools:latest"
 
@@ -14,7 +14,7 @@ process AGORA_DATA_RUN {
 
     script:
     """
-    adt ${config} --upload --platform NEXTFLOW
+    adt ${config} --upload --platform NEXTFLOW --run_id ${workflow.runName}
     """
 
 }

From 23d3c7bde703024cefa7dfc3bd6d949eaed7183c Mon Sep 17 00:00:00 2001
From: bwmac <bwm03570@gmail.com>
Date: Fri, 7 Jun 2024 15:33:32 -0600
Subject: [PATCH 2/2] removes debug

---
 main.nf | 1 -
 1 file changed, 1 deletion(-)

diff --git a/main.nf b/main.nf
index c4343a6..ba54a9f 100644
--- a/main.nf
+++ b/main.nf
@@ -3,7 +3,6 @@ nextflow.enable.dsl = 2
 
 //runs test config for Agora
 process AGORA_DATA_RUN {
-    debug = true
 
     container "ghcr.io/sage-bionetworks/agora-data-tools:latest"