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pom.xml
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pom.xml
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<?xml version="1.0" encoding="UTF-8" ?>
<project
xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd"
>
<modelVersion>4.0.0</modelVersion>
<groupId>org.sagebionetworks</groupId>
<artifactId>portal</artifactId>
<packaging>war</packaging>
<version>develop-SNAPSHOT</version>
<name>Synapse Portal</name>
<properties>
<!-- Synapse Web Client -->
<maven.compiler.source>11</maven.compiler.source>
<maven.compiler.target>11</maven.compiler.target>
<webappDirectory>
${project.build.directory}/${project.build.finalName}
</webappDirectory>
<synapse.version>514.0</synapse.version>
<gwtVersion>2.11.0</gwtVersion>
<org.springframework.version>5.3.37</org.springframework.version>
<guiceVersion>6.0.0</guiceVersion>
<ginVersion>2.1.2</ginVersion>
<xstream.version>1.3.1</xstream.version>
<schema-to-pojo.version>0.6.10</schema-to-pojo.version>
<jackson.version>2.15.2</jackson.version>
<jackson.databind.version>2.15.2</jackson.databind.version>
<log4j.version>2.17.1</log4j.version>
<gwtbootstrap3.version>1.5.10</gwtbootstrap3.version>
<gwtbootstrap3.extras.version>1.5.2</gwtbootstrap3.extras.version>
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
<gwtvisualizationwrappers.version>
1.6-gwt-2.7.0
</gwtvisualizationwrappers.version>
<freemarker.version>2.3.32</freemarker.version>
<gwt.module.suffix />
</properties>
<repositories>
<repository>
<id>sagebionetworks-releases-local</id>
<name>sagebionetworks-releases-local</name>
<url>
https://sagebionetworks.jfrog.io/sagebionetworks/libs-releases-local
</url>
</repository>
<repository>
<id>sagebionetworks-ext</id>
<name>sagebionetworks-releases-ext</name>
<url>
https://sagebionetworks.jfrog.io/sagebionetworks/ext-releases-local
</url>
</repository>
<repository>
<id>atlassian-m2-repository</id>
<url>https://m2proxy.atlassian.com/repository/public</url>
</repository>
<repository>
<id>mvn-gae-plugin-repo</id>
<url>https://maven-gae-plugin.googlecode.com/svn/repository/</url>
</repository>
<repository>
<id>maven-central-rep-1</id>
<url>https://repo1.maven.org/maven2/</url>
</repository>
<repository>
<id>sun-maven-repository</id>
<url>https://download.java.net/maven/2/</url>
</repository>
<repository>
<id>apache-repo-releases</id>
<url>https://repository.apache.org/content/repositories/releases/</url>
</repository>
</repositories>
<pluginRepositories>
<pluginRepository>
<id>sagebionetworks-plugins-releases-local</id>
<url>
https://sagebionetworks.jfrog.io/sagebionetworks/plugins-releases-local/
</url>
<snapshots>
<enabled>true</enabled>
</snapshots>
<releases>
<enabled>true</enabled>
</releases>
</pluginRepository>
<pluginRepository>
<id>Maven Repo 1</id>
<url>https://repo1.maven.org/maven2/</url>
<snapshots>
<enabled>true</enabled>
</snapshots>
<releases>
<enabled>true</enabled>
</releases>
</pluginRepository>
</pluginRepositories>
<build>
<resources>
<resource>
<directory>src/main/resources</directory>
<filtering>true</filtering>
<includes>
<include>**/*.properties</include>
</includes>
</resource>
<resource>
<directory>src/main/resources</directory>
<filtering>false</filtering>
<excludes>
<exclude>**/*.properties</exclude>
</excludes>
</resource>
</resources>
<!-- Generate compiled stuff in the folder used for developing mode -->
<outputDirectory>${webappDirectory}/WEB-INF/classes</outputDirectory>
<pluginManagement>
<plugins>
<!-- Tell the eclipse m2e plugin to execute these lifecycle mappings
See: http://wiki.eclipse.org/M2E_plugin_execution_not_covered -->
<plugin>
<groupId>org.eclipse.m2e</groupId>
<artifactId>lifecycle-mapping</artifactId>
<version>1.0.0</version>
<configuration>
<lifecycleMappingMetadata>
<pluginExecutions>
<pluginExecution>
<pluginExecutionFilter>
<groupId>org.sagebionetworks</groupId>
<artifactId>schema-to-pojo-maven-plugin</artifactId>
<versionRange>[0,)</versionRange>
<goals>
<goal>generate</goal>
</goals>
</pluginExecutionFilter>
<action>
<execute />
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>org.codehaus.mojo</groupId>
<artifactId>gwt-maven-plugin</artifactId>
<versionRange>[0,)</versionRange>
<goals>
<goal>clean</goal>
<goal>compile</goal>
<goal>test</goal>
<goal>i18n</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore />
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<versionRange>[0,)</versionRange>
<goals>
<goal>exploded</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore />
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-antrun-plugin</artifactId>
<versionRange>[1.7,)</versionRange>
<goals>
<goal>run</goal>
</goals>
</pluginExecutionFilter>
<action>
<execute />
</action>
</pluginExecution>
</pluginExecutions>
</lifecycleMappingMetadata>
</configuration>
</plugin>
</plugins>
</pluginManagement>
<plugins>
<!-- GWT Maven Plugin -->
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>gwt-maven-plugin</artifactId>
<version>2.10.0</version>
<executions>
<execution>
<goals>
<goal>clean</goal>
<goal>compile</goal>
<goal>test</goal>
<goal>i18n</goal>
<goal>run-codeserver</goal>
</goals>
</execution>
</executions>
<!-- Plugin configuration. There are many available options, see gwt-maven-plugin
documentation at codehaus.org -->
<configuration>
<workDir>${project.build.directory}/gwt/codeserver</workDir>
<launcherDir>${webappDirectory}</launcherDir>
<runTarget>Portal.html</runTarget>
<hostedWebapp>${webappDirectory}</hostedWebapp>
<i18nMessagesBundle>
org.sagebionetworks.web.client.Messages
</i18nMessagesBundle>
<module>org.sagebionetworks.web.Portal${gwt.module.suffix}</module>
<!-- GWT compiler options -->
<compileReport>true</compileReport>
<!-- Disabled because it causes an EmptyStackException on GWT 2.8.1
<soycDetailed>true</soycDetailed> -->
<encoding>${project.build.sourceEncoding}</encoding>
<!-- <compilerMetrics>true</compilerMetrics> -->
<logLevel>INFO</logLevel>
<sourceLevel>auto</sourceLevel>
<extraJvmArgs>
-Xmx2048m -Xms2048m -XX:MaxDirectMemorySize=256m
</extraJvmArgs>
<fragmentCount>1</fragmentCount>
<disableCastChecking>true</disableCastChecking>
<disableClassMetaData>true</disableClassMetaData>
</configuration>
</plugin>
<plugin>
<artifactId>maven-clean-plugin</artifactId>
<version>3.3.2</version>
<configuration>
<filesets>
<fileset>
<directory>gwt-unitCache</directory>
<includes>
<include>**/*</include>
</includes>
</fileset>
<fileset>
<!-- Clean dir where we copy JS/CSS from node_modules -->
<directory>src/main/webapp/generated</directory>
<includes>
<include>**/*</include>
</includes>
<followSymlinks>false</followSymlinks>
</fileset>
</filesets>
</configuration>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<version>3.3.2</version>
<executions>
<!-- Copy static web files before executing gwt:run -->
<execution>
<id>execution1</id>
<phase>compile</phase>
<goals>
<goal>exploded</goal>
</goals>
<configuration>
<webappDirectory>${webappDirectory}</webappDirectory>
<!-- This will create a jar that can be used for integration testing -->
<attachClasses>true</attachClasses>
</configuration>
</execution>
<!-- This next section is to copy the source maps into the WEB-INF directory
(during the package phase, from junit output) -->
<execution>
<id>execution2</id>
<phase>package</phase>
<goals>
<goal>exploded</goal>
</goals>
<configuration>
<webResources>
<resource>
<directory>
${webappDirectory}/Portal/.junit_symbolMaps/
</directory>
<targetPath>WEB-INF</targetPath>
</resource>
</webResources>
</configuration>
</execution>
</executions>
</plugin>
<!-- We use this assembly to package the GWT RPC dependencies so they
are aviablible fore integration testing. -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<version>2.1</version>
<configuration>
<descriptors>
<descriptor>src/main/assembly/gwt-rpc-assembly.xml</descriptor>
</descriptors>
</configuration>
<executions>
<execution>
<id>make-assembly</id>
<!-- this is used for inheritance merges -->
<phase>package</phase>
<!-- bind to the packaging phase -->
<goals>
<goal>single</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.6.0</version>
</plugin>
<plugin>
<groupId>org.apache.tomcat.maven</groupId>
<artifactId>tomcat7-maven-plugin</artifactId>
<version>2.2</version>
<configuration>
<port>8989</port>
</configuration>
</plugin>
<plugin>
<groupId>com.github.eirslett</groupId>
<artifactId>frontend-maven-plugin</artifactId>
<version>1.11.0</version>
<executions>
<!--We can install node/yarn as a part of the build process-->
<execution>
<id>Install node and yarn</id>
<goals>
<goal>install-node-and-yarn</goal>
</goals>
<phase>generate-resources</phase>
</execution>
<!--Install dependencies specified in package.json, including SRC-->
<execution>
<id>yarn install</id>
<goals>
<goal>yarn</goal>
</goals>
<configuration>
<arguments>install</arguments>
</configuration>
<phase>generate-resources</phase>
</execution>
<!--Compile SCSS (using `sass` - a Dart Sass compatible compiler from npm)-->
<!--Our SCSS also depends on Synapse React Client SCSS-->
<execution>
<id>compile sass</id>
<goals>
<goal>yarn</goal>
</goals>
<configuration>
<arguments>
sass --no-source-map --style=compressed --unicode --stop-on-error --update --load-path=node_modules
src/main/webapp/sass:src/main/webapp/generated
</arguments>
</configuration>
<phase>process-resources</phase>
</execution>
</executions>
<configuration>
<nodeVersion>v18.16.0</nodeVersion>
<yarnVersion>v1.22.17</yarnVersion>
</configuration>
</plugin>
<!--Copy the Synapse React Client UMD build to the webapp directory-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-antrun-plugin</artifactId>
<version>3.0.0</version>
<executions>
<execution>
<id>Copy dependencies from node_modules to webapp (generated)</id>
<phase>process-resources</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<target>
<copy
file="${project.basedir}/node_modules/jquery/dist/jquery.min.js"
tofile="src/main/webapp/generated/jquery.min.js"
/>
<copy
file="${project.basedir}/node_modules/jquery-ui/dist/jquery-ui.min.js"
tofile="src/main/webapp/generated/jquery-ui.min.js"
/>
<copy todir="src/main/webapp/generated/bootstrap">
<fileset dir="${project.basedir}/node_modules/bootstrap3" />
</copy>
<copy
file="${project.basedir}/node_modules/jquery-ui/dist/themes/base/jquery-ui.min.css"
tofile="src/main/webapp/generated/jquery-ui.min.css"
/>
<copy
file="${project.basedir}/node_modules/jsplumb/dist/js/jsplumb.min.js"
tofile="src/main/webapp/generated/jsplumb.min.js"
/>
<copy
file="${project.basedir}/node_modules/pica/dist/pica.min.js"
tofile="src/main/webapp/generated/pica.min.js"
/>
<copy
file="${project.basedir}/node_modules/croppie/croppie.min.js"
tofile="src/main/webapp/generated/croppie.min.js"
/>
<copy
file="${project.basedir}/node_modules/croppie/croppie.css"
tofile="src/main/webapp/generated/croppie.css"
/>
<copy
file="${project.basedir}/node_modules/moment/min/moment.min.js"
tofile="src/main/webapp/generated/moment.min.js"
/>
<copy
file="${project.basedir}/node_modules/@mui/material/umd/material-ui.production.min.js"
tofile="src/main/webapp/generated/material-ui.production.min.js"
/>
<copy todir="src/main/webapp/generated">
<fileset
dir="${project.basedir}/node_modules/synapse-react-client/dist/umd"
/>
</copy>
<copy
file="${project.basedir}/node_modules/react/umd/react.production.min.js"
tofile="src/main/webapp/generated/react.production.min.js"
/>
<copy
file="${project.basedir}/node_modules/react-dom/umd/react-dom.production.min.js"
tofile="src/main/webapp/generated/react-dom.production.min.js"
/>
<copy
file="${project.basedir}/node_modules/react-router-dom/umd/react-router-dom.min.js"
tofile="src/main/webapp/generated/react-router-dom.min.js"
/>
<copy
file="${project.basedir}/node_modules/react-transition-group/dist/react-transition-group.min.js"
tofile="src/main/webapp/generated/react-transition-group.min.js"
/>
<copy
file="${project.basedir}/node_modules/react-measure/dist/index.umd.js"
tofile="src/main/webapp/generated/react-measure.js"
/>
<copy
file="${project.basedir}/node_modules/universal-cookie/umd/universalCookie.min.js"
tofile="src/main/webapp/generated/universalCookie.min.js"
/>
<copy
file="${project.basedir}/node_modules/react-bootstrap/dist/react-bootstrap.min.js"
tofile="src/main/webapp/generated/react-bootstrap.min.js"
/>
<copy
file="${project.basedir}/node_modules/prop-types/prop-types.min.js"
tofile="src/main/webapp/generated/prop-types.min.js"
/>
<copy
file="${project.basedir}/node_modules/font-awesome/css/font-awesome.css"
tofile="src/main/webapp/generated/font-awesome.css"
/>
<copy
file="${project.basedir}/node_modules/font-awesome/fonts/fontawesome-webfont.woff"
tofile="src/main/webapp/fonts/fontawesome-webfont.woff"
/>
<copy
file="${project.basedir}/node_modules/font-awesome/fonts/fontawesome-webfont.woff2"
tofile="src/main/webapp/fonts/fontawesome-webfont.woff2"
/>
<copy
file="${project.basedir}/node_modules/font-awesome/fonts/fontawesome-webfont.ttf"
tofile="src/main/webapp/fonts/fontawesome-webfont.ttf"
/>
<copy
file="${project.basedir}/node_modules/plotly.js/dist/plotly.min.js"
tofile="src/main/webapp/generated/plotly.min.js"
/>
<!-- Copy development versions of some key dependencies for devmode debugging -->
<copy
file="${project.basedir}/node_modules/react/umd/react.development.js"
tofile="src/main/webapp/generated/react.development.js"
/>
<copy
file="${project.basedir}/node_modules/react-dom/umd/react-dom.development.js"
tofile="src/main/webapp/generated/react-dom.development.js"
/>
<copy
file="${project.basedir}/node_modules/react-plotly.js/dist/create-plotly-component.min.js"
tofile="src/main/webapp/generated/create-plotly-component.min.js"
/>
<copy
file="${project.basedir}/node_modules/spark-md5/spark-md5.min.js"
tofile="src/main/webapp/generated/spark-md5.min.js"
/>
<copy
file="${project.basedir}/node_modules/papaparse/papaparse.min.js"
tofile="src/main/webapp/generated/papaparse.min.js"
/>
<copy todir="src/main/webapp/generated/katex">
<fileset dir="${project.basedir}/node_modules/katex/dist" />
</copy>
<copy
file="${project.basedir}/node_modules/markdown-it/dist/markdown-it.min.js"
tofile="src/main/webapp/generated/markdown-it.js"
/>
<copy
file="${project.basedir}/node_modules/markdown-it-br/dist/markdown-it-br.min.js"
tofile="src/main/webapp/generated/markdown-it-br.js"
/>
<copy
file="${project.basedir}/node_modules/markdown-it-center-text/dist/markdown-it-center-text.min.js"
tofile="src/main/webapp/generated/markdown-it-center-text.js"
/>
<copy
file="${project.basedir}/node_modules/@sage-bionetworks/markdown-it-container/dist/markdown-it-container.min.js"
tofile="src/main/webapp/generated/markdown-it-container.js"
/>
<copy
file="${project.basedir}/node_modules/markdown-it-inline-comments/dist/markdown-it-inline-comments.min.js"
tofile="src/main/webapp/generated/markdown-it-inline-comments.js"
/>
<copy
file="${project.basedir}/node_modules/markdown-it-math/dist/markdown-it-math.min.js"
tofile="src/main/webapp/generated/markdown-it-math.js"
/>
<copy
file="${project.basedir}/node_modules/markdown-it-strikethrough-alt/dist/markdown-it-strikethrough-alt.min.js"
tofile="src/main/webapp/generated/markdown-it-strikethrough-alt.js"
/>
<copy
file="${project.basedir}/node_modules/markdown-it-sub-alt/dist/markdown-it-sub.min.js"
tofile="src/main/webapp/generated/markdown-it-sub.js"
/>
<copy
file="${project.basedir}/node_modules/markdown-it-sup-alt/dist/markdown-it-sup.min.js"
tofile="src/main/webapp/generated/markdown-it-sup.js"
/>
<copy
file="${project.basedir}/node_modules/markdown-it-synapse/dist/index.global.js"
tofile="src/main/webapp/generated/markdown-it-synapse.js"
/>
<copy
file="${project.basedir}/node_modules/markdown-it-synapse-heading/dist/markdown-it-synapse-heading.min.js"
tofile="src/main/webapp/generated/markdown-it-synapse-heading.js"
/>
<copy
file="${project.basedir}/node_modules/markdown-it-synapse-math/dist/markdown-it-synapse-math.min.js"
tofile="src/main/webapp/generated/markdown-it-synapse-math.js"
/>
<copy
file="${project.basedir}/node_modules/markdown-it-synapse-table/dist/index.umd.cjs"
tofile="src/main/webapp/generated/markdown-it-synapse-table.js"
/>
<copy
file="${project.basedir}/node_modules/xss/dist/xss.min.js"
tofile="src/main/webapp/generated/xss.min.js"
/>
<copy
file="${project.basedir}/node_modules/katex/dist/katex.min.js"
tofile="src/main/webapp/generated/katex.min.js"
/>
<copy
file="${project.basedir}/node_modules/katex/dist/katex.css"
tofile="src/main/webapp/generated/katex.css"
/>
</target>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>com.google.inject</groupId>
<artifactId>guice</artifactId>
<version>${guiceVersion}</version>
</dependency>
<dependency>
<groupId>com.google.inject.extensions</groupId>
<artifactId>guice-servlet</artifactId>
<version>${guiceVersion}</version>
</dependency>
</dependencies>
</dependencyManagement>
<dependencies>
<dependency>
<groupId>com.google.gwt.eventbinder</groupId>
<artifactId>eventbinder</artifactId>
<version>1.1.0</version>
<exclusions>
<exclusion>
<groupId>com.google.gwt</groupId>
<artifactId>gwt-user</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.gwtbootstrap3</groupId>
<artifactId>gwtbootstrap3</artifactId>
<version>${gwtbootstrap3.version}</version>
</dependency>
<dependency>
<groupId>org.gwtbootstrap3</groupId>
<artifactId>gwtbootstrap3-extras</artifactId>
<version>${gwtbootstrap3.extras.version}</version>
</dependency>
<dependency>
<groupId>org.gwtvisualizationwrappers</groupId>
<artifactId>gwtvisualizationwrappers</artifactId>
<version>${gwtvisualizationwrappers.version}</version>
</dependency>
<!-- Sage Bionetworks Dependencies -->
<dependency>
<groupId>javax.mail</groupId>
<artifactId>mail</artifactId>
<version>1.4</version>
</dependency>
<dependency>
<groupId>org.freemarker</groupId>
<artifactId>freemarker</artifactId>
<version>${freemarker.version}</version>
</dependency>
<dependency>
<groupId>org.sagebionetworks</groupId>
<artifactId>lib-stackConfiguration</artifactId>
<version>${synapse.version}</version>
</dependency>
<dependency>
<groupId>org.sagebionetworks</groupId>
<artifactId>synapseJavaClient</artifactId>
<version>${synapse.version}</version>
</dependency>
<dependency>
<groupId>org.sagebionetworks</groupId>
<artifactId>lib-utils</artifactId>
<version>${synapse.version}</version>
</dependency>
<dependency>
<!-- jsoup HTML parser library @ http://jsoup.org/ -->
<groupId>org.jsoup</groupId>
<artifactId>jsoup</artifactId>
<version>[1.14.2,)</version>
</dependency>
<!-- Make sure all the Jackson libraries are of the same version -->
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.datatype</groupId>
<artifactId>jackson-datatype-jsr310</artifactId>
<version>${jackson.version}</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.commonmark/commonmark -->
<dependency>
<groupId>org.commonmark</groupId>
<artifactId>commonmark</artifactId>
<version>0.20.0</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.jaxrs</groupId>
<artifactId>jackson-jaxrs-json-provider</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.module</groupId>
<artifactId>jackson-module-jaxb-annotations</artifactId>
<version>${jackson.version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>${jackson.databind.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-core</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-aspects</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-context-support</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-tx</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<version>${org.springframework.version}</version>
<scope>test</scope>
</dependency>
<!-- Used for timer triggers (cron-like) Note: spring-context-support also
depends on this libary as an optional dependancy. Since spring-context-support
version 4.0.2-RELEASE uses quartz version 1.8.6 that is the version of quartz
we are using. See the spring-context-support pom.xml. -->
<dependency>
<groupId>org.quartz-scheduler</groupId>
<artifactId>quartz</artifactId>
<version>2.3.2</version>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
<version>4.5.14</version>
</dependency>
<dependency>
<groupId>org.sagebionetworks</groupId>
<artifactId>csv-utilities</artifactId>
<version>${synapse.version}</version>
</dependency>
<dependency>
<groupId>com.amazonaws</groupId>
<artifactId>aws-java-sdk-core</artifactId>
<version>1.12.501</version>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>${org.springframework.version}</version>
</dependency>
<!-- Logging -->
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-core</artifactId>
<version>${log4j.version}</version>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-api</artifactId>
<version>${log4j.version}</version>
</dependency>
<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-jcl</artifactId>
<version>${log4j.version}</version>
</dependency>
<dependency>
<groupId>org.gwtproject</groupId>
<artifactId>gwt-servlet</artifactId>
<version>${gwtVersion}</version>
<scope>runtime</scope>
</dependency>
<dependency>
<groupId>org.gwtproject</groupId>
<artifactId>gwt-user</artifactId>
<version>2.11.0</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.gwtproject</groupId>
<artifactId>gwt-codeserver</artifactId>
<version>${gwtVersion}</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>com.google.inject</groupId>
<artifactId>guice</artifactId>
<version>${guiceVersion}</version>
</dependency>
<dependency>
<groupId>com.google.inject.extensions</groupId>
<artifactId>guice-servlet</artifactId>
<version>${guiceVersion}</version>
</dependency>
<dependency>
<groupId>com.google.inject.extensions</groupId>
<artifactId>guice-assistedinject</artifactId>
<version>${guiceVersion}</version>
</dependency>
<dependency>
<groupId>com.google.gwt.inject</groupId>
<artifactId>gin</artifactId>
<version>${ginVersion}</version>
<scope>provided</scope>
</dependency>
<!-- This provides the GWT MVP framework -->
<dependency>
<groupId>com.gwtplatform</groupId>
<artifactId>gwtp-all</artifactId>
<version>1.6</version>
<scope>provided</scope>
<exclusions>
<exclusion>
<groupId>com.google.gwt</groupId>
<artifactId>gwt-user</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.sagebionetworks</groupId>
<artifactId>lib-shared-models</artifactId>
<version>${synapse.version}</version>
</dependency>
<dependency>
<groupId>org.sagebionetworks</groupId>
<artifactId>schema-to-pojo-gwt</artifactId>
<version>${schema-to-pojo.version}</version>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>
<version>2.4</version>
</dependency>
<dependency>
<groupId>commons-codec</groupId>
<artifactId>commons-codec</artifactId>
<version>1.3</version>
</dependency>
<dependency>
<groupId>net.oauth.core</groupId>
<artifactId>oauth</artifactId>
<version>20100527</version>
</dependency>
<!-- Test only dependencies -->
<dependency>
<groupId>com.sun.grizzly</groupId>
<artifactId>grizzly-servlet-webserver</artifactId>
<version>1.9.18-i</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.13.1</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.google.gwt.gwtmockito</groupId>
<artifactId>gwtmockito</artifactId>
<version>1.1.9</version>
<scope>test</scope>
<exclusions>
<exclusion>
<groupId>com.google.gwt</groupId>
<artifactId>gwt-user</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- Scribe library, imported for OAuth for LinkedIn -->
<dependency>
<groupId>org.scribe</groupId>
<artifactId>scribe</artifactId>
<version>1.2.3</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>32.1.1-jre</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava-gwt</artifactId>
<version>32.1.1-jre</version>
</dependency>
<!-- Prov Tree layout -->
<dependency>
<groupId>org.abego.treelayout</groupId>
<artifactId>org.abego.treelayout.core</artifactId>
<version>1.0.3</version>
</dependency>
<!-- note: This refers to a custom POM in the SageBionetworks artifactory,
omitting Guice 2.0 -->
<dependency>
<groupId>org.openid4java</groupId>
<artifactId>openid4java-nodeps</artifactId>
<version>0.9.6.sb</version>
</dependency>
<dependency>
<groupId>net.sourceforge.nekohtml</groupId>
<artifactId>nekohtml</artifactId>
<version>1.9.22</version>
</dependency>
<dependency>
<groupId>org.apache.james</groupId>
<artifactId>apache-mime4j</artifactId>
<version>0.8.9</version>
<type>pom</type>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-core</artifactId>
<version>2.28.2</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.atlassian.jira</groupId>
<artifactId>jira-rest-java-client</artifactId>
<version>2.0.0-m2</version>
</dependency>
<dependency>
<groupId>com.google.jsinterop</groupId>
<artifactId>base</artifactId>
<version>1.0.1</version>
</dependency>
<dependency>
<groupId>com.google.elemental2</groupId>
<artifactId>elemental2-core</artifactId>
<version>1.2.2</version>
</dependency>
<dependency>
<groupId>com.google.elemental2</groupId>
<artifactId>elemental2-dom</artifactId>
<version>1.2.2</version>
</dependency>
</dependencies>
<distributionManagement>
<repository>
<id>sagebionetworks</id>
<name>sagebionetworks-releases</name>
<url>
https://sagebionetworks.jfrog.io/sagebionetworks/libs-releases-local
</url>
</repository>
<snapshotRepository>
<id>sagebionetworks</id>
<name>sagebionetworks-snapshots</name>
<url>
https://sagebionetworks.jfrog.io/sagebionetworks/libs-snapshots-local
</url>
<uniqueVersion>false</uniqueVersion>
</snapshotRepository>
</distributionManagement>
</project>