Jupyter Notebook spikeInterface import issue HPC

[htran1902]

Hi,

I use Jupyter Notebook on a HPC and I got the following error when importing spike interface by doing

import spikeinterface.full as si

Restarting the kernel does not change anything. Any ideas how to fix it? (I am not a Python expert) Thanks!

[alejoe91]

Hi @htran1902

Can you try to update numpy to 1.26.4?

[htran1902]

The numpy version is already 1.26.4

[zm711]

Could you try just doing

pip install -U numba

[htran1902]

I still have the same error (Numba version is 0.60.0) and spikeinterface version is 0.100.6

[zm711]

Could you just do a full pip list so we can see what is in the environment?

[htran1902]

Here's a list of modules in the environment

[zm711]

The last thing you could try would be

pip uninstall numpy
pip uninstall numba
pip install numba

this could break the environment, but basically this type of numba issue typically occurs when there is a miscommunication between numpy or numba (or both). So I would give that a go and if it still doesn't work then I think we will have to dig into how you are doing the install :)

[h-mayorquin]

Besides import time, this is an extra reason to delay numba till execution.

[zm711]

Any word @htran1902 ?