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error in Function: ov.pl.embedding_celltype #204

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summer-4-DESIGH opened this issue Nov 7, 2024 · 2 comments
Open

error in Function: ov.pl.embedding_celltype #204

summer-4-DESIGH opened this issue Nov 7, 2024 · 2 comments

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@summer-4-DESIGH
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Can anyone help me understand how to handle this issue? When I run the code as shown in the omicverse tutorial:
ov.pl.embedding_celltype(adata,figsize=(7,4),basis='X_umap',
celltype_key='cell type',
title='Cell type',
celltype_range=(1,10),
embedding_range=(4,10),)The plot appears as shown below. I tried adjusting celltype_range and embedding_range, but it has no effect. What could be causing this? I successfully ran these codes before, possibly in version 1.62, but now I'm using version 1.68, and it no longer works."
image

@Starlitnightly
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Could you provide the entire code and data?

@summer-4-DESIGH
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Hi
Thank you for your help.
I have attached my data via email . I am able to perform most functions in OmicVerse without issues; however, the ov.pl.embedding_celltype function has been particularly challenging for me. Express my appreciation for OmicVerse. Plots generated by this tool are truly beautiful. Thank you for creating such an excellent resource!

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