error：cellphonedb

[sbu123456577]

I encountered a ValueError when running the CellPhoneDB command with my own data

ValueError Traceback (most recent call last)
Cell In[96], line 1
----> 1 ov.pl.cpdb_interacting_heatmap(adata=adata,
2 celltype_key='newcelltype',
3 means=cpdb_results['means'],
4 pvalues=cpdb_results['pvalues'],
5 source_cells=['EC'],
6 target_cells=['FB1','FB2','FB3','FB4'],
7 plot_secret=True,
8 min_means=3,
9 nodecolor_dict=None,
10 ax=None,
11 figsize=(2,6),
12 fontsize=10,)

File ~/miniconda3/envs/omicverse/lib/python3.10/site-packages/omicverse/pl/_cpdb.py:479, in cpdb_interacting_heatmap(adata, celltype_key, means, pvalues, source_cells, target_cells, min_means, nodecolor_dict, ax, figsize, fontsize, plot_secret, return_table)
476 else:
477 row_ha=None
--> 479 cm = DotClustermapPlotter(corr_mat,x='level_1',y='level_0',value='means',
480 c='means',s='-logp',cmap='Reds',vmin=0,
481 top_annotation=col_ha,left_annotation=row_ha,
482 row_dendrogram=True,
483 show_rownames=True,show_colnames=True,)
484 cm.ax_heatmap.grid(which='minor',color='gray',linestyle='--')
...
1065 "finite values.")
1067 n = int(distance.num_obs_y(y))
1068 method_code = _LINKAGE_METHODS[method]

ValueError: The condensed distance matrix must contain only finite values.

However, other functions are working properly, including the regulatory network plot. It’s only the receptor-ligand heatmap that I cannot visualize. I have already removed NA values, but it still hasn’t worked.

[Starlitnightly]

@DBinary