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L(1) = Link([0 0.5 1 0]); % First '0' doesn't mean 0. MATLAB takes it in as a variable 'theta' because 5th term is 0 (or null), which defines a revolute joint.
L(2) = Link([0 0 1 0]);
L(3) = Link([0 0 0 0 1]); % Second '0' doesn't mean 0. MATLAB takes it in as a a variable 'd' because 5th term is 1, which defines a prismatic joint.