pyproject.toml

[build-system]
requires = ["setuptools>=61.0", "versioneer[toml]"]
build-backend = "setuptools.build_meta"


[project]
name = "pyrolite"
authors = [{ name = "Morgan Williams", email = "morgan.williams@csiro.au" }]
description = "Tools for geochemical data analysis."
license = { file = "LICENSE" }
requires-python = ">=3.8"
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "Intended Audience :: Education",
    "Natural Language :: English",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: 3.8",
    "Programming Language :: Python :: 3.9",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Framework :: Matplotlib",
    "Topic :: Scientific/Engineering",
    "Topic :: Software Development :: Libraries :: Python Modules",
]
keywords = ["geochemistry", "compositional data", "visualisation", "petrology"]
dynamic = ["version", "readme"]
dependencies = [
    "numpy",
    "numpydoc",
    "tinydb>4.1",     # >4.1 required for read-only access mode for JSON storage
    "periodictable",
    "matplotlib",
    "mpltern>=0.4.0",
    "scipy>=1.2",     # uses scipy.optimize.Bounds, added around 1.2
    "sympy>=1.7",
    "pandas>=1.0",    # dataframe acccessors, attrs attribute
    "requests",       # used by alphaMELTS utilities,  util.web
]

[tool.setuptools.packages]
find = { exclude = ['test*', "docs*"] } # "**/__pycache__/*"
#  include = ["Aitchison/*.py"],

[tool.setuptools.dynamic]
readme = { file = "README.md", content-type = "text/markdown" }

[project.urls]
"Issue tracker" = "https://github.com/morganjwilliams/pyrolite/issues"
"Documentation" = "https://pyrolite.readthedocs.io/"
"Code" = "https://github.com/morganjwilliams/pyrolite"

[project.optional-dependencies]
docs = [
    "sphinx_rtd_theme",
    "docutils<0.17",
    "sphinx>=4",
    "sphinx-autodoc-annotation",
    "sphinx_gallery>=0.6.0",
    "recommonmark",
    # "jupyterlite-sphinx",
    # "jupyterlite-pyodide-kernel",
]
db = ["pyodbc", "psycopg2"]
test = ["pytest", "pytest-runner", "pytest-cov", "coverage", "coveralls"]
skl = ["scikit-learn", "joblib"]
spatial = ["owslib", "geojson", "psutil"]
stats = ["statsmodels", "scikit-learn"] # statsmodels for conditional ke
excel = ["xlrd", "openpyxl"]
dev = [
    "pytest",
    "versioneer",
    "black",
    "isort",
    "twine",
    "pyrolite[test,docs,skl]",
    "build",
]

[metadata]
url = "https://github.com/morganjwilliams/pyrolite"

[tool.coverage.run]
relative_files = true
source = ["pyrolite"]
omit = [
    "test/*",                    # Omit test, docs, draft and data files
    "docs/*",
    "**/data",
    "draft/*",
    "pyrolite/util/database.py", # Omit extensions with extra dependencies
    "*/_version.py",             # Ignore _version.py
]

[tool.versioneer]
VCS = "git"
style = "pep440"
versionfile_source = "pyrolite/_version.py"
versionfile_build = "pyrolite/_version.py"
tag_prefix = ""
parentdir_prefix = "pyrolite-"

[tool.pytest.ini_options]
python_files = "*.py"
addopts = "--cov=pyrolite --cov-report html --cov-report xml --cov-report term-missing --cov-config .coveragerc"
testpaths = ["test"]
pythonpath = ["."]