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environment.yml
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environment.yml
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name: NLR
channels:
- conda-forge
- bioconda
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- aioeasywebdav=2.4.0=py36h5fab9bb_1001
- aiohttp=3.7.4.post0=py36h8f6f2f9_0
- amply=0.1.4=py_0
- appdirs=1.4.4=pyh9f0ad1d_0
- argtable2=2.13=h14c3975_1001
- asn1crypto=1.4.0=pyh9f0ad1d_0
- async-timeout=3.0.1=py_1000
- atk-1.0=2.36.0=h3371d22_4
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=21.2.0=pyhd8ed1ab_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bcrypt=3.2.0=py36h8f6f2f9_1
- bedtools=2.30.0=h7d7f7ad_2
- binutils_impl_linux-64=2.36.1=h193b22a_2
- blast=2.7.1=h4422958_6
- boost=1.67.0=py36h3e44d54_0
- boost-cpp=1.67.0=h3a22d5f_0
- boto3=1.19.12=pyhd8ed1ab_0
- botocore=1.22.12=pyhd8ed1ab_0
- brotlipy=0.7.0=py36h8f6f2f9_1001
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2021.10.8=ha878542_0
- cachetools=4.2.4=pyhd8ed1ab_0
- cairo=1.16.0=h18b612c_1001
- certifi=2021.5.30=py36h5fab9bb_0
- cffi=1.14.6=py36hd8eec40_1
- chardet=4.0.0=py36h5fab9bb_1
- charset-normalizer=2.0.0=pyhd8ed1ab_0
- clustalo=1.2.4=h1b792b2_4
- coincbc=2.10.5=hcee13e7_1
- configargparse=1.5.3=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cryptography=2.5=py36hb7f436b_1
- curl=7.64.0=h646f8bb_0
- cycler=0.11.0=pyhd8ed1ab_0
- datrie=0.8.2=py36h8f6f2f9_2
- decorator=5.1.0=pyhd8ed1ab_0
- docutils=0.17.1=py36h5fab9bb_0
- dropbox=11.23.0=pyhd8ed1ab_0
- expat=2.4.1=h9c3ff4c_0
- fftw=3.3.10=nompi_h74d3f13_101
- filechunkio=1.8=py_2
- filelock=3.3.2=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=hba837de_1005
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- ftputil=5.0.1=pyhd8ed1ab_0
- gcc=11.2.0=h702ea55_2
- gcc_bootstrap_linux-64=11.2.0=h6cd0796_2
- gcc_bootstrap_linux-s390x=11.2.0=h15f7010_2
- gcc_impl_linux-64=11.2.0=h82a94d6_11
- gdk-pixbuf=2.42.6=h04a7f16_0
- gettext=0.19.8.1=h73d1719_1008
- ghostscript=9.18=1
- giflib=5.2.1=h36c2ea0_2
- gitdb=4.0.9=pyhd8ed1ab_0
- gitpython=3.1.18=pyhd8ed1ab_0
- glib=2.70.0=h780b84a_1
- glib-tools=2.70.0=h780b84a_1
- gmp=6.1.2=hf484d3e_1000
- gnutls=3.5.19=h2a4e5f8_1
- google-api-core=1.31.2=pyhd8ed1ab_1
- google-api-python-client=2.28.0=pyhd8ed1ab_0
- google-auth=1.28.0=pyhd3eb1b0_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_0
- google-cloud-core=1.7.2=pyh6c4a22f_0
- google-cloud-storage=1.19.0=py_0
- google-crc32c=1.1.2=py36h0208b43_0
- google-resumable-media=2.1.0=pyh6c4a22f_0
- googleapis-common-protos=1.53.0=py36h5fab9bb_0
- graphite2=1.3.13=h58526e2_1001
- graphviz=2.42.3=h0511662_0
- grpcio=1.16.0=py36h4f00d22_1000
- gts=0.7.6=h64030ff_2
- harfbuzz=2.4.0=h37c48d4_1
- hmmer=3.3.2=h1b792b2_1
- httplib2=0.20.2=pyhd8ed1ab_1
- icu=58.2=hf484d3e_1000
- idna=3.1=pyhd3deb0d_0
- idna_ssl=1.1.0=py36h9f0ad1d_1001
- imagemagick=7.0.11_12=pl5320h0cb4662_0
- importlib-metadata=4.8.1=py36h5fab9bb_0
- importlib_resources=5.4.0=pyhd8ed1ab_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- ipython_genutils=0.2.0=py_1
- jbig=2.1=h7f98852_2003
- jinja2=3.0.2=pyhd8ed1ab_0
- jmespath=0.10.0=pyh9f0ad1d_0
- jpeg=9d=h36c2ea0_0
- jsonschema=2.6.0=py36_1002
- jupyter_core=4.8.1=py36h5fab9bb_0
- kernel-headers_linux-64=2.6.32=he073ed8_15
- kiwisolver=1.3.1=py36h605e78d_1
- krb5=1.16.3=hc83ff2d_1000
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.36.1=hea4e1c9_2
- lerc=3.0=h9c3ff4c_0
- libblas=3.9.0=12_linux64_openblas
- libcblas=3.9.0=12_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libcurl=7.64.0=h01ee5af_0
- libdeflate=1.8=h7f98852_0
- libedit=3.1.20170329=0
- libffi=3.4.2=h9c3ff4c_4
- libgcc=7.2.0=h69d50b8_2
- libgcc-devel_linux-64=11.2.0=h0952999_11
- libgcc-ng=11.2.0=h1d223b6_11
- libgfortran-ng=11.2.0=h69a702a_11
- libgfortran5=11.2.0=h5c6108e_11
- libglib=2.70.0=h174f98d_1
- libgomp=11.2.0=h1d223b6_11
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=12_linux64_openblas
- libopenblas=0.3.18=pthreads_h8fe5266_0
- libpng=1.6.37=h21135ba_2
- libprotobuf=3.18.0=h780b84a_1
- librsvg=2.50.3=hfa39831_1
- libsanitizer=11.2.0=he4da1e4_11
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.8.0=h1ad7b7a_1003
- libstdcxx-ng=11.2.0=he4da1e4_11
- libtiff=4.3.0=h6f004c6_2
- libtool=2.4.6=h9c3ff4c_1008
- libuuid=2.32.1=h7f98852_1000
- libwebp=1.2.1=h3452ae3_0
- libwebp-base=1.2.1=h7f98852_0
- libxcb=1.13=h7f98852_1003
- libxml2=2.9.12=h03d6c58_0
- libzlib=1.2.11=h36c2ea0_1013
- logmuse=0.2.6=pyh8c360ce_0
- lz4-c=1.9.3=h9c3ff4c_1
- markupsafe=2.0.1=py36h8f6f2f9_0
- matplotlib-base=3.3.4=py36hd391965_0
- more-itertools=8.10.0=pyhd8ed1ab_0
- multidict=5.2.0=py36h8f6f2f9_0
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=5.9=10
- nettle=3.3=0
- networkx=2.6.3=pyhd8ed1ab_1
- numpy=1.19.5=py36hfc0c790_2
- oauth2client=4.1.3=py_0
- olefile=0.46=pyh9f0ad1d_1
- openjpeg=2.4.0=hb52868f_1
- openssl=1.0.2u=h516909a_0
- packaging=21.2=pyhd8ed1ab_1
- pandas=1.1.5=py36h284efc9_0
- pango=1.42.4=h7062337_4
- paramiko=2.8.0=pyhd8ed1ab_0
- pcre=8.45=h9c3ff4c_0
- peppy=0.31.2=pyhd8ed1ab_0
- perl=5.32.1=1_h7f98852_perl5
- perl-archive-tar=2.18=1
- perl-exporter-tiny=0.042=1
- perl-list-moreutils=0.413=1
- perl-threaded=5.26.0=0
- pillow=8.3.2=py36h676a545_0
- pip=21.3.1=pyhd8ed1ab_0
- pixman=0.38.0=h516909a_1003
- pkg-config=0.29.2=h36c2ea0_1008
- ply=3.11=py_1
- prettytable=2.4.0=pyhd8ed1ab_0
- protobuf=3.18.0=py36hc4f0c31_0
- psutil=5.8.0=py36h8f6f2f9_1
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.5.1=py36h5fab9bb_0
- py=1.11.0=pyh6c4a22f_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.10.0=pyhd8ed1ab_0
- pygraphviz=1.6=py36he9cec78_1
- pynacl=1.4.0=py36h8f6f2f9_2
- pyopenssl=19.0.0=py36_0
- pyparsing=2.4.7=pyhd8ed1ab_1
- pysftp=0.2.9=py_1
- pysocks=1.7.1=py36h5fab9bb_3
- pytest=3.2.5=py36_0
- python=3.6.5=1
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-irodsclient=1.0.0=pyhd8ed1ab_0
- python_abi=3.6=2_cp36m
- pytz=2021.3=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=5.4.1=py36h8f6f2f9_1
- ratelimiter=1.2.0=py_1002
- readline=7.0=0
- requests=2.26.0=pyhd8ed1ab_0
- rsa=4.7.2=pyh44b312d_0
- s3transfer=0.5.0=pyhd8ed1ab_0
- samtools=1.9=h46bd0b3_0
- scipy=1.5.3=py36h81d768a_1
- seqkit=2.0.0=h9ee0642_0
- setuptools=58.0.4=py36h5fab9bb_2
- simplejson=3.17.5=py36h8f6f2f9_0
- six=1.16.0=pyh6c4a22f_0
- slacker=0.14.0=py_0
- smart_open=5.2.1=pyhd8ed1ab_0
- smmap=3.0.5=pyh44b312d_0
- snakemake=6.10.0=hdfd78af_0
- snakemake-minimal=6.10.0=pyhdfd78af_0
- sqlite=3.20.1=2
- stone=3.2.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- sysroot_linux-64=2.12=he073ed8_15
- tabulate=0.8.9=pyhd8ed1ab_0
- tk=8.6.11=h27826a3_1
- toml=0.10.2=pyhd8ed1ab_0
- toposort=1.7=pyhd8ed1ab_0
- tornado=6.1=py36h8f6f2f9_1
- traitlets=4.3.3=pyhd8ed1ab_2
- typing-extensions=3.10.0.2=hd8ed1ab_0
- typing_extensions=3.10.0.2=pyha770c72_0
- tzdata=2021e=he74cb21_0
- ubiquerg=0.6.1=pyh9f0ad1d_0
- uritemplate=3.0.1=py_0
- urllib3=1.26.7=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wheel=0.37.0=pyhd8ed1ab_1
- wrapt=1.13.1=py36h8f6f2f9_0
- xmlrunner=1.7.7=py_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxpm=3.5.13=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h516909a_0
- yarl=1.6.3=py36h8f6f2f9_2
- zipp=3.6.0=pyhd8ed1ab_0
- zlib=1.2.11=h36c2ea0_1013
- zstd=1.5.0=ha95c52a_0
prefix: /home/zhenyan/anaconda3/envs/NLR