You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi,
Great tools! And can anyone help the issue :
I am trying to convert merged_nodups.txt file to .hic file use pre.
juicer.sh -S final -g hg38 -d file -p hg38.chrom.sizes -y hg38_Arima.txt -z hg38.fa -D juicer
Not including fragment map
Start preprocess
Writing header
Writing body
java.lang.NumberFormatException: For input string: "260�93"
at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.lang.Integer.parseInt(Integer.java:492)
at java.lang.Integer.parseInt(Integer.java:527)
at juicebox.tools.utils.original.AsciiPairIterator.advance(AsciiPairIterator.java:218)
at juicebox.tools.utils.original.AsciiPairIterator.next(AsciiPairIterator.java:271)
at juicebox.tools.utils.original.Preprocessor.computeWholeGenomeMatrix(Preprocessor.java:488)
at juicebox.tools.utils.original.Preprocessor.writeBody(Preprocessor.java:580)
at juicebox.tools.utils.original.Preprocessor.preprocess(Preprocessor.java:346)
at juicebox.tools.clt.old.PreProcessing.run(PreProcessing.java:116)
at juicebox.tools.HiCTools.main(HiCTools.java:96)
Part of my merged_nodups.txt was posted below:
0 chr1 10005 0 0 chr1 248945772 1260595 14 37M1I10M5I12M5I80M * 7 30M21I20M1D53M1I24M * A00126:242:HHGM5DSX3:3:2434:13503:16454 A00126:242:HHGM5DSX3:3:2434:13503:16454
16 chr1 10447 0 16 chr1 248945875 1260595 6 3S65M * 23 53M2D68M1I24M * A00126:242:HHGM5DSX3:3:1525:30698:25191 A00126:242:HHGM5DSX3:3:1525:30698:25191
Thanks,
kalo
The text was updated successfully, but these errors were encountered:
Hi,
Great tools! And can anyone help the issue :
I am trying to convert merged_nodups.txt file to .hic file use pre.
juicer.sh -S final -g hg38 -d file -p hg38.chrom.sizes -y hg38_Arima.txt -z hg38.fa -D juicer
Not including fragment map
Start preprocess
Writing header
Writing body
java.lang.NumberFormatException: For input string: "260�93"
at java.lang.NumberFormatException.forInputString(NumberFormatException.java:65)
at java.lang.Integer.parseInt(Integer.java:492)
at java.lang.Integer.parseInt(Integer.java:527)
at juicebox.tools.utils.original.AsciiPairIterator.advance(AsciiPairIterator.java:218)
at juicebox.tools.utils.original.AsciiPairIterator.next(AsciiPairIterator.java:271)
at juicebox.tools.utils.original.Preprocessor.computeWholeGenomeMatrix(Preprocessor.java:488)
at juicebox.tools.utils.original.Preprocessor.writeBody(Preprocessor.java:580)
at juicebox.tools.utils.original.Preprocessor.preprocess(Preprocessor.java:346)
at juicebox.tools.clt.old.PreProcessing.run(PreProcessing.java:116)
at juicebox.tools.HiCTools.main(HiCTools.java:96)
Part of my merged_nodups.txt was posted below:
0 chr1 10005 0 0 chr1 248945772 1260595 14 37M1I10M5I12M5I80M * 7 30M21I20M1D53M1I24M * A00126:242:HHGM5DSX3:3:2434:13503:16454 A00126:242:HHGM5DSX3:3:2434:13503:16454
16 chr1 10447 0 16 chr1 248945875 1260595 6 3S65M * 23 53M2D68M1I24M * A00126:242:HHGM5DSX3:3:1525:30698:25191 A00126:242:HHGM5DSX3:3:1525:30698:25191
Thanks,
kalo
The text was updated successfully, but these errors were encountered: