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I am getting a warning message I haven't been able to find here or elsewhere - WARNING: Could not ls [read file]. I am aligning PE 150 bp reads using STAR version 2.7.10a on Ubuntu 22.04.4 LTS. I get the warning for both read files.
Parameters from the log file:
runThreadN 6
genomeDir "/path/to/genome/dir/"
readFilesIn "/path/to/R1.fastq.gz" "/path/to/R2.fastq.gz"
readFilesCommand gunzip -c
outFileNamePrefix "/desired/path/to/output/files"
outReadsUnmapped Fastx
outSAMtype BAM SortedByCoordinate
outSAMattributes Standard
clip5pNbases 10 10
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Hello,
I am getting a warning message I haven't been able to find here or elsewhere - WARNING: Could not ls [read file]. I am aligning PE 150 bp reads using STAR version 2.7.10a on Ubuntu 22.04.4 LTS. I get the warning for both read files.
Parameters from the log file:
runThreadN 6
genomeDir "/path/to/genome/dir/"
readFilesIn "/path/to/R1.fastq.gz" "/path/to/R2.fastq.gz"
readFilesCommand gunzip -c
outFileNamePrefix "/desired/path/to/output/files"
outReadsUnmapped Fastx
outSAMtype BAM SortedByCoordinate
outSAMattributes Standard
clip5pNbases 10 10
Thank you for any assistance!
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