chemical_gene_interaction_association_config.yaml

# metamodel_version: 1.7.0# version: 3.0.3id: chemical_gene_interaction_association
schema_generating: true
description: describes a physical interaction between a chemical entity and a gene
  or gene product. Any biological or chemical effect resulting from such an interaction
  are out of scope, and covered by the ChemicalAffectsGeneAssociation type (e.g. impact
  of a chemical on the abundance, activity, structure, etc, of either participant
  in the interaction)
display_name: chemical gene interaction association
document_category: chemical gene interaction association
weight: 20
fields:
- id: id
  description: A unique identifier for an entity. Must be either a CURIE shorthand
    for a URI or a complete URI
  display_name: id
- id: iri
  description: An IRI for an entity. This is determined by the id using expansion
    rules.
  display_name: iri
- id: name
  description: A human-readable name for an attribute or entity.
  display_name: name
- id: description
  description: a human-readable description of an entity
  display_name: description
- id: source
  display_name: source
- id: has_attribute
  description: connects any entity to an attribute
  display_name: has attribute
  cardinality: multi
- id: negated
  description: if set to true, then the association is negated i.e. is not true
  display_name: negated
- id: qualifiers
  description: connects an association to qualifiers that modify or qualify the meaning
    of that association
  display_name: qualifiers
  cardinality: multi
- id: publications
  description: connects an association to publications supporting the association
  display_name: publications
  cardinality: multi
- id: has_evidence
  description: connects an association to an instance of supporting evidence
  display_name: has evidence
  cardinality: multi
- id: knowledge_source
  description: An Information Resource from which the knowledge expressed in an Association
    was retrieved, directly or indirectly. This can be any resource through which
    the knowledge passed on its way to its currently serialized form. In practice,
    implementers should use one of the more specific subtypes of this generic property.
  display_name: knowledge source
- id: original_knowledge_source
  display_name: original knowledge source
- id: primary_knowledge_source
  description: The most upstream source of the knowledge expressed in an Association
    that an implementer can identify.  Performing a rigorous analysis of upstream
    data providers is expected; every effort is made to catalog the most upstream
    source of data in this property.  Only one data source should be declared primary
    in any association.  "aggregator knowledge source" can be used to caputre non-primary
    sources.
  display_name: primary knowledge source
- id: aggregator_knowledge_source
  description: An intermediate aggregator resource from which knowledge expressed
    in an Association was retrieved downstream of the original source, on its path
    to its current serialized form.
  display_name: aggregator knowledge source
  cardinality: multi
- id: timepoint
  description: a point in time
  display_name: timepoint
- id: type
  description: rdf:type of biolink:Association should be fixed at rdf:Statement
  display_name: association_type
- id: category
  description: "Name of the high level ontology class in which this entity is categorized.\
    \ Corresponds to the label for the biolink entity type class.\n * In a neo4j database\
    \ this MAY correspond to the neo4j label tag.\n * In an RDF database it should\
    \ be a biolink model class URI.\nThis field is multi-valued. It should include\
    \ values for ancestors of the biolink class; for example, a protein such as Shh\
    \ would have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`,\
    \ ...\nIn an RDF database, nodes will typically have an rdf:type triples. This\
    \ can be to the most specific biolink class, or potentially to a class more specific\
    \ than something in biolink. For example, a sequence feature `f` may have a rdf:type\
    \ assertion to a SO class such as TF_binding_site, which is more specific than\
    \ anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity,\
    \ biolink:NamedThing}"
  display_name: association_category
  cardinality: multi
- id: subject_form_or_variant_qualifier
  display_name: chemical gene interaction association_subject form or variant qualifier
- id: subject_part_qualifier
  display_name: chemical gene interaction association_subject part qualifier
- id: subject_derivative_qualifier
  display_name: chemical gene interaction association_subject derivative qualifier
- id: subject_context_qualifier
  display_name: chemical gene interaction association_subject context qualifier
- id: object_form_or_variant_qualifier
  display_name: chemical gene interaction association_object form or variant qualifier
- id: object_part_qualifier
  display_name: chemical gene interaction association_object part qualifier
- id: object_context_qualifier
  display_name: chemical gene interaction association_object context qualifier
- id: anatomical_context_qualifier
  description: A statement qualifier representing an anatomical location where an
    relationship expressed in an association took place (can be a tissue, cell type,
    or subcellular location).
  display_name: chemical gene interaction association_anatomical context qualifier
- id: subject
  description: connects an association to the subject of the association. For example,
    in a gene-to-phenotype association, the gene is subject and phenotype is object.
  display_name: chemical gene interaction association_subject
- id: object
  description: connects an association to the object of the association. For example,
    in a gene-to-phenotype association, the gene is subject and phenotype is object.
  display_name: chemical gene interaction association_object
- id: predicate
  description: A high-level grouping for the relationship type. AKA minimal predicate.
    This is analogous to category for nodes.
  display_name: chemical gene interaction association_predicate