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Installation

This guide provides step-by-step instructions for compiling and running GROOPS from scratch.

Overview

While GROOPS is intended to be a standalone software package, some functionality depends on external libraries. Hard dependencies are:

Additional libraries extend the feature set of GROOPS and can be optionally enabled at compile time. At the moment, these include:

  • NetCDF for reading and writing NetCDF files
  • zlib for reading and writing compressed files
  • the Essential Routines for Fundamental Astronomy (liberfa) for high-precision Earth rotation

Another optional dependency is an implementation of the Message Passing Interface standard (MPI, for example MPICH or Microsoft MPI). Resource intensive tasks and algorithms are designed and implemented to be optionally run in parallel on distributed systems.

To visualize data sets, GROOPS requires an installation of the Generic Mapping Tools (GMT).

Get the GROOPS Source Code

You can download the source code of a specific version on the Releases page, or clone the repository to always get the latest updates:

git clone https://github.com/groops-devs/groops.git

Microsoft Windows

GROOPS under Windows requires CMake, and 64bit C++14 and Fortan compilers. A convenient way to install all required tools is through MSYS2. This installation guide assumes that the GROOPS source code is located in C:\groops.

  1. Download the MSYS2 installer and follow the installation guide.

  2. Important: After successful installation, close the MSYS2 terminal from step 1 and open the MSYS2 MinGW 64-bit terminal through Start Menu > MSYS2 64-bit > MSYS2 MinGW 64-bit.

    The command prompt in the terminal window should now read username@hostname MINGW64.

  3. Install compilers, cmake, expat, OpenBLAS, and LAPACK:

    pacman -S mingw-w64-x86_64-toolchain mingw-w64-x86_64-cmake expat mingw64/mingw-w64-x86_64-openblas

  4. (Optional) Install the NetCDF library:

    pacman -S mingw-w64-x86_64-netcdf

  5. (Optional) Download and install liberfa:

    5.1. Install the tar utility and required build tool:

    pacman -S tar make

    5.2. Download and build the ERFA library:

    mkdir -p /c/groops/lib && cd /c/groops/lib
wget https://github.com/liberfa/erfa/releases/download/v1.7.0/erfa-1.7.0.tar.gz
tar -xvf erfa-1.7.0.tar.gz
cd erfa-1.7.0
./configure
make
make install

  6. (Optional) Install Microsoft MPI:

    6.1 Download and install the Microsoft MPI.

    6.2 Install the MSYS2 msmpi package:

    pacman -S mingw-w64-x86_64-msmpi

  7. Create the build directory and compile GROOPS:

    mkdir /c/groops/source/build && cd /c/groops/source/build
cmake.exe .. -G "MinGW Makefiles" -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX="C:\groops"
mingw32-make.exe -j4
mingw32-make.exe install

  8. Make sure to also read the post-installation steps.

Graphical User Interface (GUI)

The GROOPS GUI is based on Qt and is tested with Qt version 5.15.1. Precompiled Windows binaries of the GROOPS GUI are provided with each release. To compile the GUI yourself, you need to:

  1. Download and install Qt (registration required).

  2. When prompted to choose which Qt components to install, select Select Package Categories > LTS and then select Qt > Qt 5.15.1 or a newer version. Under Developer and Designer Tools, Qt Creator Debugger Support, Debugging Tools for Windows, cmake, and Ninja should be selected automatically.

  3. Open the project file C:\groops\gui\groopsGui.pro in Qt Creator and build the project.

Generic Mapping Tools (GMT)

The Generic Mapping Tools (GMT) are an optional dependency of GROOPS and enable the generation of high-quality figures. GMT provides Windows binaries which can be easily installed. The current GROOPS release is tested against GMT version 6.0.0.

Windows post-installation steps

After the installation of GROOPS and GROOPS GUI, we recommend some post-installation configuration steps to make working with GROOPS easier.

  1. To use the GROOPS and GROOPS GUI binaries without directory prefix, you have to add the required directories to the system path.

    1.1. Open the Control Panel through the Windows Start Menu: Windows System > Control Panel.

    1.2. In the Control Panel window, go to User Accounts > User Accounts.

    1.3. There you should click on Change my environment variables, which will open a new window.

    1.4. In the environment variable window, select Path and click Edit.... A pop-up window will appear where you can add the following directories to your system path:

    "C:\groops\bin"
"C:\msys64\mingw64\bin"
"C:\Program Files\Microsoft MPI\Bin"

    In case you manually compiled the GUI, additionally add the directory:

    "C:\Qt\5.15.1\mingw81_64\bin"

  2. (Optional) Set the environment variable OPENBLAS_NUM_THREADS to the number of threads to use for matrix operations.

Linux

Most Linux distributions provide all GROOPS dependencies through their package managers. We provide a detailed installation guide for Ubuntu and OpenSUSE, the installation steps are however very similar for other distributions.

Ubuntu

The installation procedure for Ubuntu is representative for all Debian based distributions, however the individual package names may differ. Check your distribution's documentation to find the correct packages. This installation guide assumes that the GROOPS source code is located in $HOME/groops.

  1. First, make sure your system is up to date:

    sudo apt update && sudo apt upgrade

  2. Install dependencies and build tools:

    sudo apt-get install g++ gfortran cmake libexpat1-dev libopenblas-dev

  3. (Optional) Install the NetCDF development package:

    sudo apt-get install libnetcdf-dev

  4. (Optional) Install liberfa development packages:

    sudo apt-get install liberfa-dev

  5. (Optional) Install MPI development packages:

    sudo apt-get install mpi-default-dev

  6. Create the build directory and compile GROOPS:

    mkdir $HOME/groops/source/build && cd $HOME/groops/source/build
cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=$HOME/groops
make -j4
make install

  7. Make sure to also read the post-installation steps.

Graphical User Interface (GUI)

The GROOPS GUI depends on Qt packages. To install the required packages, run:

sudo apt-get install qtbase5-dev

Then, change into the gui directory and compile the source code:

cd $HOME/groops/gui
qmake
make

Generic Mapping Tools (GMT)

Ubuntu provides packages for the Generic Mapping Tools:

sudo apt-get install gmt gmt-gshhg

OpenSUSE

  1. First, make sure your system is up to date:

    sudo zypper up

  2. Install dependencies and build tools:

    sudo zypper install gcc-c++ gcc-fortran cmake libexpat-devel openblas-devel

  3. (Optional) Install the NetCDF development package:

    sudo zypper install netcdf-devel

  4. (Optional) Install liberfa development packages:

    4.1 Add the OpenSUSE Science Repository (change OpenSUSE release version if necessary):

    sudo zypper addrepo http://download.opensuse.org/repositories/science/openSUSE_Leap_15.2/ science

    4.2 Install the required package:

    sudo zypper install erfa-devel

  5. (Optional) Install MPI development packages:

    sudo zypper install mpich-devel

  6. Create the build directory and compile GROOPS:

    mkdir $HOME/groops/source/build && cd $HOME/groops/source/build
cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=$HOME/groops
make -j4
make install

  7. Make sure to also read the post-installation steps.

Graphical User Interface (GUI)

The GROOPS GUI depends on Qt packages. To install the required packages, run:

sudo zypper install libqt5-qtbase-devel

Then, change into the gui directory and compile the source code:

cd $HOME/groops/gui
qmake-qt5
make

Generic Mapping Tools (GMT)

The OpenSUSE packages for the Generic Mapping Tools are available in the GEO repository (change OpenSUSE release version if necessary):

sudo zypper addrepo http://download.opensuse.org/repositories/Application:/Geo/openSUSE_Leap_15.2/ GEO

Then install the packages:

sudo zypper install GMT GMT-doc GMT-coastlines

Arch Linux

GROOPS is packaged for the Arch User Repository. You can install the groops-git package providing the core GROOPS executables, and the groopsgui-git package providing the GUI and documentation.

The easiest way to do this is through an AUR helper. If you are using yay, for example, you can install GROOPS and the GUI by executing:

yay -S groops-git groopsgui-git

If you want to develop for GROOPS, a manual installation is preferable. This installation guide assumes that the GROOPS source code is located in $HOME/groops.

  1. First, make sure your system is up to date:

    sudo pacman -Syu

  2. Install dependencies and build tools:

    sudo pacman -S cmake gcc gcc-gfortran expat lapack zlib

  3. (Optional) Install the NetCDF development package:

    sudo pacman -S netcdf-cxx

  4. (Optional) Install liberfa development packages. liberfa is available as an AUR package.

  5. (Optional) Install an MPI development package, for example openmpi:

    sudo pacman -S openmpi

  6. Create the build directory and compile GROOPS.

    mkdir $HOME/groops/source/build && cd $HOME/groops/source/build
cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=$HOME/groops
make -j4
make install

  7. Make sure to also read the post-installation steps.

Graphical User Interface (GUI)

The GROOPS GUI depends on Qt packages. To install the required packages, run:

sudo pacman -S qt5-base

Then, change into the gui directory and compile the source code:

cd $HOME/groops/gui
qmake
make

Generic Mapping Tools (GMT)

The Generic Mapping Tools are available from the Arch User Repository. Install the gmt6 and gmt-coast packages:

Linux post-installation steps

After the installation of GROOPS and GROOPS GUI, we recommend some post-installation configuration steps to make working with GROOPS easier.

  1. To use the GROOPS and GROOPS GUI binaries without directory prefix, you have to add the required directories to the system path:

    echo "export PATH=$PATH:$HOME/groops/bin" >> $HOME/.bashrc
source $HOME/.bashrc

  2. (Optional) Set the environment variable OPENBLAS_NUM_THREADS to the number of threads to use for matrix operations.