diff --git a/Paired-end/CpG_Me_PE_controller.sh b/Paired-end/CpG_Me_PE_controller.sh
index 29e9611..960edb5 100644
--- a/Paired-end/CpG_Me_PE_controller.sh
+++ b/Paired-end/CpG_Me_PE_controller.sh
@@ -128,7 +128,7 @@ ${genome} \
 # Generate merged CpG methylation for bsseq DMRfinder 
 # Merge CpGs is an experimental feature
 sbatch \
---dependency=afterok:$jid6 \
+--dependency=afterok:$jid5:$jid6 \
 --ntasks=3 \
 --mem-per-cpu=2000 \
 --time=2-00:00:00 \
diff --git a/Single-end/CpG_Me_SE_controller.sh b/Single-end/CpG_Me_SE_controller.sh
index 59f19c0..e98272d 100644
--- a/Single-end/CpG_Me_SE_controller.sh
+++ b/Single-end/CpG_Me_SE_controller.sh
@@ -115,7 +115,7 @@ ${genome} \
 # Generate merged CpG methylation for bsseq DMRfinder 
 # Merge CpGs is an experimental feature
 sbatch \
---dependency=afterok:$jid5 \
+--dependency=afterok:$jid4:$jid5 \
 --ntasks=3 \
 --mem-per-cpu=2000 \
 --time=2-00:00:00 \