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"sha256:e25424d6f9d69bfc8aceaa46d2218fa3f76c6c330ca1728ac21e4a870df437e5"}, + {file = "types_Flask_Migrate-4.0.0.20240205-py3-none-any.whl", hash = "sha256:571b0359664844df6dfe08c591d1cc7a2bbe5cca2684e886888123d822d85876"}, ] [package.dependencies] @@ -2264,4 +2240,4 @@ multidict = ">=4.0" [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "c0d08e820457ce46699a1ba2fcd68da5efd4aa7723720af21772793071d9ad07" +content-hash = "105abe444e2f97a82555af30e4aea8865c822c8509dc11a7b356eab125df4e90" diff --git a/pyproject.toml b/pyproject.toml index fdc6e1a..adb236f 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "chord-drs" -version = "0.15.1" +version = "0.15.2" description = "An implementation of a data repository system (as per GA4GH's specs) for the Bento platform." authors = ["David Lougheed "] license = "LGPL-3.0" @@ -14,7 +14,7 @@ include = [ [tool.poetry.dependencies] python = "^3.10" boto3 = ">=1.34.6,<1.35" -bento-lib = {version = "^11.2.0", extras = ["flask"]} +bento-lib = {version = "^11.4.1", extras = ["flask"]} flask = ">=2.2.5,<2.3" flask-sqlalchemy = ">=3.0.5,<3.1" # 3.1 drops SQLAlchemy 1 support flask-migrate = ">=4.0.5,<4.1" @@ -28,7 +28,7 @@ asgiref = "^3.7.2" [tool.poetry.group.dev.dependencies] coverage = "^7.2.1" moto = "^4.2.10" -pytest = "^7.2.2" +pytest = "^7.4.4" pytest-cov = "^4.0.0" pytest-dotenv = "^0.5.2" responses = "^0.22.0" From 62018efb6ed753bfb5526579868efbefdd2755f5 Mon Sep 17 00:00:00 2001 From: David Lougheed Date: Tue, 6 Feb 2024 14:00:29 -0500 Subject: [PATCH 2/2] ci: update actions + fix codecov action --- .github/workflows/lint.yml | 2 +- .github/workflows/test.yml | 11 ++++++++--- 2 files changed, 9 insertions(+), 4 deletions(-) diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml index 34aa034..f55ffa0 100644 --- a/.github/workflows/lint.yml +++ b/.github/workflows/lint.yml @@ -9,7 +9,7 @@ jobs: runs-on: ubuntu-latest steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v4 + - uses: actions/setup-python@v5 name: Set up Python with: python-version: "3.10" diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index f5bc019..49f9bf1 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -12,7 +12,7 @@ jobs: python-version: [ "3.10", "3.11" ] steps: - uses: actions/checkout@v4 - - uses: actions/setup-python@v4 + - uses: actions/setup-python@v5 name: Set up Python with: python-version: ${{ matrix.python-version }} @@ -21,6 +21,11 @@ jobs: - name: Install Python dependencies run: python -m poetry install - name: Test - run: python -m poetry run pytest -svv --cov=chord_drs --cov-branch + run: python -m poetry run pytest -svv --cov=chord_drs --cov-branch --cov-report xml - name: Upload coverage to Codecov - uses: codecov/codecov-action@v3 + uses: codecov/codecov-action@v4 + with: + fail_ci_if_error: true + verbose: true + env: + CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}