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add putative D. melanogaster mariner element from Kennedy et al #32

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cbergman opened this issue Jan 24, 2020 · 0 comments
Open

add putative D. melanogaster mariner element from Kennedy et al #32

cbergman opened this issue Jan 24, 2020 · 0 comments

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@cbergman
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TGCCCAAAAAGTAATTGCGGATTTTTCATATAGTCGGCGTTGACAAATTTTTTCAACGGCTTGTGACTTTGTAATTGCATTCTTTCATCTGTCAGTTATCAGCTGTTACTATTAGCTGAGTGTCAAAATTGGTTTCGCAAATTCCGTTCTGGAGATTTTTCACTTAAACATGAGCCCCGTTCAGGTCGGCTATATGAAGTTGATGATGACCTAATCAAAGCATTAATCGAATTGGATCGTCATGTAAATAAGCAGGAGATAGGAGAGAAGTTTAATATACCAAAATCAACCGTTTACTATCACATAAAAAGACTAGTGAAAAAGTTTGATATTTGGGTACCACATGTATTGAAAGAAATTCATTTAACACACCGAATAAATGCTTGTGATATGCAACTTAAATGCAATGAATTCGATCCGTTTTTAAAACGAATCACATCTGGAAAGGAAAAATGGATTGTTTACAACAACGTTAGTCGAAAACGATCATGGTCCAAGCATGGTGAACCAGCTCAAACCACTTCAAAGGCTGATATCCACCAAAAGAAGGTTATGCTGTCTGTTTGGTGGGATTGGAAGGGTGTCGTATATTTTGAACTGCTTCCAAGGAACCAAACGATTAATTCGGATGTTTACTGTCACCAATTGAACAAATTGAATACAAGGAGAAGCGACCAGAATTGGTCAATCGTAAAGGTGTCATATTCCACCAGGATAACGCTAGACTGCACACATCTTTGGTCACTATCCAAAAACTGTGTGAGCTTAGGTAGGAACTTTTGATGCATCCACCGTATAGCCCTGACCTGGAACCATCAGACTACCATTTATTTCGATCTTTGCAGAACTCCTTAAATGGTAAAACTTTCGGGAATGATGAGGCTATAAAATCGCACTTGGTTCAGTTTTTTGCAGATAAAGGCCAGAAGTTCTATTGACCGTGGAATAGAAAAAAGGTTATCGAAAAAAATGGCAATTCATTCTAAGTATTATTAAAAATGCATTTACTTTCTTTTAAAAAATCGGAAATTATTTTTTGGGCA
  • the annotation of the element is as follows:
Putative Drosophila melanogaster mariner sequence Drosophila melanogaster (fruit fly) flybase.org, dmel-all-chromosome-r5.29.fasta Location/Qualifiers 

Source             1..1043
                   /organism="Drosophila melanogaster"
                   /mol_type="genomic DNA"
                   /transposon="putative mariner transposon"
repeat_region      1..26
                   /note="left terminal inverted repeat"
ORF1               66..780
                   translation=LCNCILSSVSYQLLLLAECQNWFRKFRSGDFSLKHEPRSGRLYEV
                   DDDLIKALIELDRHVNKQEIGEKFNIPKSTVYYHIKRLVKKFDIWVPHVLKEIHLTH
                   RINACDMQLKCNEFDPFLKRITSGKEKWIVYNNVSRKRSWSKHGEPAQTTSKADIHQ
                   KKVMLSVWWDWKGVVYFELLPRNQTINSDVYCHQLNKLNTRRSDQNWSIVKVSYSTR
                   ITLDCTHLWSLSKNCVSLGRNF
                   /product="putative mariner transposase"
repeat_region      1018..1043
                   /note="right terminal inverted repeat" 
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