From fb23590200666fe66f1c417c5d5934385cb77ab9 Mon Sep 17 00:00:00 2001 From: Shunhua Date: Wed, 7 Nov 2018 17:21:31 -0500 Subject: [PATCH] add description for thread option --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index c295880..c7243c9 100644 --- a/README.md +++ b/README.md @@ -36,6 +36,7 @@ This test script runs the main script `ngs_te_mapper.R` which takes six required - genome (full path to reference genome fasta file) - teFile (full path TE fasta file) - tsd (maximum size of potential target site duplication, default=20) +- thread (number of thread used for bwa, default=1) - output (full path to output folder) - sourceCodeFolder (full path to location of `ngs_te_mapper.R` script)