pyproject.toml

[build-system]
requires = ["setuptools", "versioneer[toml]"]
build-backend = "setuptools.build_meta"

[project]
name = "pybids"
description = "bids: interface with datasets conforming to BIDS"
readme = "README.md"
requires-python = ">=3.9"
license = { file="LICENSE" }
authors = [
  { name = "PyBIDS Developers", email = "bids-discussion@googlegroups.com" },
]
keywords = ["BIDS", "neuroimaging"]
classifiers = [
  "Development Status :: 3 - Alpha",
  "Environment :: Console",
  "Intended Audience :: Science/Research",
  "License :: OSI Approved :: MIT License",
  "Operating System :: OS Independent",
  "Programming Language :: Python",
  "Programming Language :: Python :: 3",
  "Topic :: Scientific/Engineering",
]
dependencies = [
  "numpy >=1.22",  # SPEC 0 + 1yr (3yr)
  "scipy >=1.8",   # SPEC 0 + 1yr (3yr)
  "nibabel >=4.0",  # SPEC 0 + 1yr (3yr)
  "pandas >=1.4.0",  # SPEC 0 + 1yr (3yr)
  "formulaic >=0.2.4, <0.6",  # Tested on 0.2.4-0.5.2
  "sqlalchemy >=1.3.16",
  "bids-validator>=1.14.7",  # Keep up-to-date to ensure support for recent modalities
  "num2words >=0.5.5",
  "click >=8.0",
  "universal_pathlib >=0.2.2",
]
dynamic = ["version"]

[project.optional-dependencies]
doc = [
  "sphinx >=6.2",
  "numpydoc",
  "sphinx_rtd_theme",
  "myst_nb",
  "jupytext",
]
plotting = ["graphviz"]
test = [
  "pytest >=3.3",
  "pytest-cov",
  "bsmschema",
  "coverage[toml]",
  "altair",
  "pytest-xdist",
  "s3fs" #for testing remote uri
]
model_reports = [
  "jinja2",
  "altair"
]
tutorial = [
  "nbconvert",
  "jinja2",
  "markupsafe",
  "jupyter_client",
  "ipykernel",
]
# Aliases
docs = ["pybids[doc]"]
tests = ["pybids[test]"]
ci_tests = ["pybids[test]"]
dev = ["pybids[doc,test,plotting]"]

[project.urls]
Homepage = "https://github.com/bids-standard/pybids"
"Bug Tracker" = "https://github.com/bids-standard/pybids/issues"

[project.scripts]
pybids = "bids.cli:cli"

[tool.versioneer]
VCS = "git"
style = "pep440-pre"
versionfile_source = "src/bids/_version.py"
versionfile_build = "bids/_version.py"

[tool.coverage.run]
branch = true
source = ["src/bids/*"]
omit = [
  "*/setup.py",
  "*/external/*",
  "*/due.py",
  "*/*version.py",
]

[tool.coverage.report]
include = ["src/bids/*"]