Error while running S aureus example

[rajneeshdadwal]

I get a comment when running the phylophlan

graphlan_annotate.py \

--annot graphlan/isolates_annotation.txt \
output_isolates/RAxML_bestTree.input_isolates_refined.tre \
graphlan/isolates_annotated.xml

graphlan_annotate.py: command not found

graphlan.py \

graphlan/isolates_annotated.xml \
graphlan/saureus_isolates.png \
--dpi 300

graphlan.py: command not found

[fasnicar]

Hi, I think you need to either install or clone the GraPhlAn repository https://github.com/biobakery/graphlan.

Many thanks,
Francesco