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Rebuild bayestyper recipe (#52077)
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* Rebuild bayestyper recipe

* Update bayestyper.patch

* Update meta.yaml

* Update meta.yaml
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mencian authored Nov 13, 2024
1 parent bd944aa commit 72ad548
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Showing 2 changed files with 8 additions and 6 deletions.
4 changes: 2 additions & 2 deletions recipes/bayestyper/bayestyper.patch
Original file line number Diff line number Diff line change
Expand Up @@ -21,8 +21,8 @@ index c8a6142..beddd90 100755
SET(LIBRARY_OUTPUT_PATH ${CMAKE_SOURCE_DIR}/lib)

include_directories(${CMAKE_SOURCE_DIR}/include/vcf++ ${Boost_INCLUDE_DIRS})
+message(STATUS "====== DEBUG Boost_INCLUDE_DIRS: " ${Boost_INCLUDE_DIRS})
+message(STATUS "====== DEBUG Boost_LIB_DIRS: " ${Boost_LIB_DIRS})
+message(STATUS "======= DEBUG Boost_INCLUDE_DIRS: " ${Boost_INCLUDE_DIRS})
+message(STATUS "======= DEBUG Boost_LIB_DIRS: " ${Boost_LIB_DIRS})
link_directories(${Boost_LIB_DIRS})

add_library(${PROJECT_NAME} VcfFile.cpp Variant.cpp Allele.cpp VcfMetaData.cpp AttributeSet.cpp Sample.cpp Utils.cpp Attribute.cpp JoiningString.cpp Stats.cpp AttributeFilter.cpp SampleAlleleAttributeFilter.cpp FastaReader.cpp FastaRecord.cpp Auxiliaries.cpp Trio.cpp Contig.cpp Regions.cpp)
10 changes: 6 additions & 4 deletions recipes/bayestyper/meta.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,7 +15,7 @@ source:
- stdafx.patch # [osx]

build:
number: 2
number: 3
run_exports:
- {{ pin_subpackage('bayestyper', max_pin="x") }}

Expand All @@ -42,9 +42,11 @@ test:
commands:
- bayesTyper | grep "BayesTyper"
- bayesTyperTools | grep "BayesTyperTools"
identifiers:
- biotools:bayestyper
- doi:10.1038/s41588-018-0145-5

extra:
additional-platforms:
- linux-aarch64
- osx-arm64
identifiers:
- biotools:bayestyper
- doi:10.1038/s41588-018-0145-5

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