From 0bec2176c01ca9d358f36a1a51ed8b43f353a5e7 Mon Sep 17 00:00:00 2001 From: Pau Andrio Date: Fri, 24 May 2024 10:45:10 +0200 Subject: [PATCH] [UPDATE] Updating json schemas --- biobb_dna/json_schemas/average_stiffness.json | 2 +- biobb_dna/json_schemas/basepair_stiffness.json | 2 +- biobb_dna/json_schemas/biobb_canal.json | 2 +- biobb_dna/json_schemas/biobb_canion.json | 2 +- biobb_dna/json_schemas/biobb_curves.json | 2 +- biobb_dna/json_schemas/bipopulations.json | 2 +- biobb_dna/json_schemas/canonicalag.json | 2 +- biobb_dna/json_schemas/dna_averages.json | 2 +- biobb_dna/json_schemas/dna_bimodality.json | 2 +- biobb_dna/json_schemas/dna_timeseries.json | 2 +- biobb_dna/json_schemas/interbpcorr.json | 2 +- biobb_dna/json_schemas/interhpcorr.json | 2 +- biobb_dna/json_schemas/interseqcorr.json | 2 +- biobb_dna/json_schemas/intrabpcorr.json | 2 +- biobb_dna/json_schemas/intrahpcorr.json | 2 +- biobb_dna/json_schemas/intraseqcorr.json | 2 +- biobb_dna/json_schemas/puckering.json | 2 +- 17 files changed, 17 insertions(+), 17 deletions(-) diff --git a/biobb_dna/json_schemas/average_stiffness.json b/biobb_dna/json_schemas/average_stiffness.json index aa21c5d..960f5be 100644 --- a/biobb_dna/json_schemas/average_stiffness.json +++ b/biobb_dna/json_schemas/average_stiffness.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/average_stiffness", "name": "biobb_dna AverageStiffness", "title": "Calculate average stiffness constants for each base pair of a trajectory's series.", - "description": null, + "description": "Calculate the average stiffness constants for each base pair of a trajectory's series. The input is a .ser file with the helical parameter values for each base/basepair. The output is a .csv file with the average stiffness constants for each base pair and a .jpg file with a plot of the average stiffness constants for each base pair.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/basepair_stiffness.json b/biobb_dna/json_schemas/basepair_stiffness.json index d18ddd2..1213e3e 100644 --- a/biobb_dna/json_schemas/basepair_stiffness.json +++ b/biobb_dna/json_schemas/basepair_stiffness.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/basepair_stiffness", "name": "biobb_dna BPStiffness", "title": "Calculate stiffness constants matrix between all six helical parameters for a single base pair step.", - "description": null, + "description": "Calculate stiffness constants matrix between all six helical parameters for a single base pair step.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/biobb_canal.json b/biobb_dna/json_schemas/biobb_canal.json index 4354b94..4653087 100644 --- a/biobb_dna/json_schemas/biobb_canal.json +++ b/biobb_dna/json_schemas/biobb_canal.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/biobb_canal", "name": "biobb_dna Canal", "title": "Wrapper for the Canal executable that is part of the Curves+ software suite.", - "description": null, + "description": "The Canal program is used to analyze the curvature of DNA structures.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/biobb_canion.json b/biobb_dna/json_schemas/biobb_canion.json index 38694ee..dd50044 100644 --- a/biobb_dna/json_schemas/biobb_canion.json +++ b/biobb_dna/json_schemas/biobb_canion.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/biobb_canion", "name": "biobb_dna Canion", "title": "Wrapper for the Canion executable that is part of the Curves+ software suite.", - "description": null, + "description": "Analyzes the trajectory of ions around a DNA molecule.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/biobb_curves.json b/biobb_dna/json_schemas/biobb_curves.json index 5f14d3f..b056aaf 100644 --- a/biobb_dna/json_schemas/biobb_curves.json +++ b/biobb_dna/json_schemas/biobb_curves.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/biobb_curves", "name": "biobb_dna Curves", "title": "Wrapper for the Cur+ executable that is part of the Curves+ software suite.", - "description": null, + "description": "The Cur+ program is used to analyze the structure of nucleic acids and their complexes.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/bipopulations.json b/biobb_dna/json_schemas/bipopulations.json index 5b59c3d..7cc5580 100644 --- a/biobb_dna/json_schemas/bipopulations.json +++ b/biobb_dna/json_schemas/bipopulations.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/bipopulations", "name": "biobb_dna BIPopulations", "title": "Calculate BI/BII populations from epsilon and zeta parameters.", - "description": null, + "description": "Calculate BI/BII populations from epsilon and zeta parameters.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/canonicalag.json b/biobb_dna/json_schemas/canonicalag.json index 230c45f..2a740e2 100644 --- a/biobb_dna/json_schemas/canonicalag.json +++ b/biobb_dna/json_schemas/canonicalag.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/canonicalag", "name": "biobb_dna CanonicalAG", "title": "Calculate Canonical Alpha/Gamma populations from alpha and gamma parameters.", - "description": null, + "description": "Calculate Canonical Alpha/Gamma populations from alpha and gamma parameters.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/dna_averages.json b/biobb_dna/json_schemas/dna_averages.json index 4d693da..7b516b5 100644 --- a/biobb_dna/json_schemas/dna_averages.json +++ b/biobb_dna/json_schemas/dna_averages.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/dna_averages", "name": "biobb_dna HelParAverages", "title": "Load .ser file for a given helical parameter and read each column corresponding to a base calculating average over each one.", - "description": null, + "description": "Calculate average values for each base pair and save them in a .csv file.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/dna_bimodality.json b/biobb_dna/json_schemas/dna_bimodality.json index 0ad7d1a..72cdfd9 100644 --- a/biobb_dna/json_schemas/dna_bimodality.json +++ b/biobb_dna/json_schemas/dna_bimodality.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/dna_bimodality", "name": "biobb_dna HelParBimodality", "title": "Determine binormality/bimodality from a helical parameter series dataset.", - "description": null, + "description": "Determine binormality/bimodality from a helical parameter series dataset.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/dna_timeseries.json b/biobb_dna/json_schemas/dna_timeseries.json index 0e86da5..37b7f33 100644 --- a/biobb_dna/json_schemas/dna_timeseries.json +++ b/biobb_dna/json_schemas/dna_timeseries.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/dna_timeseries", "name": "biobb_dna HelParTimeSeries", "title": "Created time series and histogram plots for each base pair from a helical parameter series file.", - "description": null, + "description": "The helical parameter series file is expected to be a table, with the first column being an index and the rest the helical parameter values for each base/basepair.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/interbpcorr.json b/biobb_dna/json_schemas/interbpcorr.json index 3b5edc6..644b876 100644 --- a/biobb_dna/json_schemas/interbpcorr.json +++ b/biobb_dna/json_schemas/interbpcorr.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/interbpcorr", "name": "biobb_dna InterBasePairCorrelation", "title": "Calculate correlation between all base pairs of a single sequence and for a single helical parameter.", - "description": null, + "description": "Calculate correlation between neighboring base pairs and pairs of helical parameters.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/interhpcorr.json b/biobb_dna/json_schemas/interhpcorr.json index 0d09dc8..4285afa 100644 --- a/biobb_dna/json_schemas/interhpcorr.json +++ b/biobb_dna/json_schemas/interhpcorr.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/interhpcorr", "name": "biobb_dna InterHelParCorrelation", "title": "Calculate correlation between helical parameters for a single inter-base pair.", - "description": null, + "description": "Calculate correlation between helical parameters for a single inter-base pair.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/interseqcorr.json b/biobb_dna/json_schemas/interseqcorr.json index 551158b..f13533f 100644 --- a/biobb_dna/json_schemas/interseqcorr.json +++ b/biobb_dna/json_schemas/interseqcorr.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/interseqcorr", "name": "biobb_dna InterSequenceCorrelation", "title": "Calculate correlation between all base pairs of a single sequence and for a single helical parameter.", - "description": null, + "description": "Calculate correlation between all base pairs of a single sequence and for a single helical parameter.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/intrabpcorr.json b/biobb_dna/json_schemas/intrabpcorr.json index 5660617..3816354 100644 --- a/biobb_dna/json_schemas/intrabpcorr.json +++ b/biobb_dna/json_schemas/intrabpcorr.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/intrabpcorr", "name": "biobb_dna IntraBasePairCorrelation", "title": "Calculate correlation between all intra-base pairs of a single sequence and for a single helical parameter.", - "description": null, + "description": "Calculate correlation between neighboring base pairs and pairs of helical parameters.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/intrahpcorr.json b/biobb_dna/json_schemas/intrahpcorr.json index 7a3e814..302871c 100644 --- a/biobb_dna/json_schemas/intrahpcorr.json +++ b/biobb_dna/json_schemas/intrahpcorr.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/intrahpcorr", "name": "biobb_dna IntraHelParCorrelation", "title": "Calculate correlation between helical parameters for a single intra-base pair.", - "description": null, + "description": "Calculate correlation between helical parameters for a single intra-base pair.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/intraseqcorr.json b/biobb_dna/json_schemas/intraseqcorr.json index 1b30323..4c0bd26 100644 --- a/biobb_dna/json_schemas/intraseqcorr.json +++ b/biobb_dna/json_schemas/intraseqcorr.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/intraseqcorr", "name": "biobb_dna IntraSequenceCorrelation", "title": "Calculate correlation between all intra-base pairs of a single sequence and for a single helical parameter.", - "description": null, + "description": "Calculate correlation between all intra-base pairs of a single sequence and for a single helical parameter.", "type": "object", "info": { "wrapped_software": { diff --git a/biobb_dna/json_schemas/puckering.json b/biobb_dna/json_schemas/puckering.json index 47c86ec..6840ed0 100644 --- a/biobb_dna/json_schemas/puckering.json +++ b/biobb_dna/json_schemas/puckering.json @@ -3,7 +3,7 @@ "$id": "http://bioexcel.eu/biobb_dna/json_schemas/1.0/puckering", "name": "biobb_dna Puckering", "title": "Calculate Puckering from phase parameters.", - "description": null, + "description": "Calculate North/East/West/South distribution of sugar puckering backbone torsions.", "type": "object", "info": { "wrapped_software": {