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This repository has been archived by the owner on Nov 8, 2019. It is now read-only.
The text was updated successfully, but these errors were encountered:
lhannest
changed the title
mydisease.info data lacks gene and variant associations
mydisease.info/v1/disease/ data lacks gene and variant associations
Jul 31, 2018
Hi Lance, these are organized under the query endpoint in MyDisease.info.
If you would like to use BioThings Explorer to query for variants related to a specific disease, you could do the following:
In [1]: frombiothings_explorer_testimportfetch_outputIn [2]: fetch_output(input_prefix='mondo', output_prefix='dbsnp', input_value='0018911')
If you would like to use BioThings Explorer to query for genes related to a specific disease, you could do the following:
In [1]: frombiothings_explorer_testimportfetch_outputIn [2]: fetch_output(input_prefix='mondo', output_prefix='ncbigene', input_value='0018911')
@lhannest Also, FYI, The python client for biothings explorer is still under development. There might be changes to some of the functions in the near future. Will keep you updated.
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http://mydisease.info/v1/disease/MONDO:0018911 appears to relate MONDO:0018911 to genes and variants, but the biothings explorer client doesn't illuminate this.
The text was updated successfully, but these errors were encountered: